Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1730 ATGCTGCTTCACCAAAGAGACTCTTCACTGAGATCTAATACCACTCCCTTTTCTGATACTCAAATGCTCAGCTTCTCTTCTCCCAAATCAGAGCCTCTCTTAACGGATAAGGCCTTCCCAAATGCCACATTGCCCTTTTCTTATCACCCATTAACTGCTTACTCCAGGAATACAGGTATATACTGTTCAGCATTAGCAGTAGCAGTGGCTACTCGAGGTTACAGCTCTGGAGGCATGCACGGGGTTTTAACTGCAAGCAGAGGGCCATTCACTCCGTCCCAGTGGATGGAGCTGGAACACCAGGCCTTGATCTACAAGTACATAACTGCAAACATGGCCGTACCATCTCATCTGCTCATCCCTATCAGAAAAGCCCTCCATTCTGCTGGGTTCAGTAATTTTCCCAACGCACTTCTGAGACCCAATACACTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACTGATCCTGAGCCAGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGCGGTGCTCAAGAGATGCTGTTGTGGACCAGAAGTACTGTGAGCGCCACATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCACGCCGTCGCTGGTGCCACTACCACCACTACTGCAAACACTGTCACCAATGCCTCAAAGCTCATGCCTAATGCTTCCTCCTCTGCGTCAGTAGTCGTGCCAGGTAACGCTGCGTCCAATACCCTCTCCTTTGCGCACCACCAATCCAAGAATTTGCAGCCTCTTGCATCTGATACTTCTGCAGCAGCCAACATCAACAGGATGTTTATGAATGACAAGGAGAATGCGAGTGAGAGAATGCAGGATGGTTCCGCCCTTCCAATGCTGCCGCCCACCATTGATCTGAAACCCAAGGAAAGCCCTTTTATGCTACATAAAGAGCAAATCCCATATGCAGAATCCTCAAGGAATGAGTTTGGGCTTGTCACTTCGGACTCCTTACTCAACCCTTCTCAGAACAGCTTTGGATCTACACAAAACCCCACTTACCGAGATACTGAATCGCAACAACCTCTTCGACATTTCATTGATGACTGGCCCAAACTTGACATGCAATCAGAAAGTACCCAGCTTTCAATATCTATTCCCATGGGCTCTTCCAATTTCATGTCATCCCCTTCCTCTCCTTCCAATGGAAAGGTCACATTGTCACCTCTTCGACTATCGAGGGAGCTAGACCCAATCCAAATGGGTTTGGGTGTGGGAAGTGGTCTGAATGAATCAAGTAATAGGCAGGCTAATTGGATTCCAATTGCTTGGGAAAGTTCTGTGGGTGGTCCTCTTGGGGAGGTTCTACATCTTAGTAATAACAGTGCAAGTGACTGCACCAAGAACTCATCTGCCCTTAACCTGATGACTGATGGGTGGGACAATAGTTCTCCATTAGGGCCATTTCCTACAGGGGTTTTGCAGAAGACCGCGTTTGGATCACTTTCCAATAGCAGCGCTGGGAGCAGTCCAAGGGCTGAGAATAACAGGTCACTTGAAGGGGCCAGCTTGTGCAGTGACCTTCTTGGATCCACTCTTGGGAATTCCTCCTCTTTTCCCAACTTGTAG 1611 0.4873 MLLHQRDSSLRSNTTPFSDTQMLSFSSPKSEPLLTDKAFPNATLPFSYHPLTAYSRNTGIYCSALAVAVATRGYSSGGMHGVLTASRGPFTPSQWMELEHQALIYKYITANMAVPSHLLIPIRKALHSAGFSNFPNALLRPNTLGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAVAGATTTTTANTVTNASKLMPNASSSASVVVPGNAASNTLSFAHHQSKNLQPLASDTSAAANINRMFMNDKENASERMQDGSALPMLPPTIDLKPKESPFMLHKEQIPYAESSRNEFGLVTSDSLLNPSQNSFGSTQNPTYRDTESQQPLRHFIDDWPKLDMQSESTQLSISIPMGSSNFMSSPSSPSNGKVTLSPLRLSRELDPIQMGLGVGSGLNESSNRQANWIPIAWESSVGGPLGEVLHLSNNSASDCTKNSSALNLMTDGWDNSSPLGPFPTGVLQKTAFGSLSNSSAGSSPRAENNRSLEGASLCSDLLGSTLGNSSSFPNL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1730 536 MobiDBLite consensus disorder prediction 335 354 - -
Dere05g1730 536 ProSiteProfiles WRC domain profile. 158 202 IPR014977 -
Dere05g1730 536 SMART QLQ_2 88 124 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere05g1730 536 Pfam QLQ 89 123 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere05g1730 536 ProSiteProfiles QLQ domain profile. 89 124 IPR014978 GO:0005524|GO:0005634|GO:0006355
Dere05g1730 536 MobiDBLite consensus disorder prediction 191 216 - -
Dere05g1730 536 Pfam WRC 159 201 IPR014977 -
Dere05g1730 536 PANTHER GROWTH-REGULATING FACTOR 5 42 385 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1730 Dere-ChrDere05 27037702 27040607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1730 38 494 GRF Transcription Factor Family AT2G22840 42.827 1.36e-91 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Dere05g1730 WRC 4.8e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1730 05 27037702 27040607 Dere05g1730 05 27037702 27040607 ECH