Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1716 ATGGGCCGAACCAACAATAGCCTCGTAGGCCCAACCGGGGCTATACTTGGTTTGGTTCGCTCGTTGACTCTCAATTCCGATCCAATTCCACATTCCTCGATGGACGACGCATATGCCAGATCTATTCCCGAGGTCCTTGATTTCTTTGGAGTGGACCCAACAAAAGGTCTTTCTGATGCCCAGGTGGTGCAGCATGCTAGACTTTACGGTACTAACGGGGCTCCTTTTTTGAAATTGGTCCTGAAACAATTTGATGATTTGCTTGTGAAGATATTAATTGCAGCTGCAATTATATCTTTCATTCTGGCTTTAATCAATGGAGAAACAGGCTTGATGGCATTTTTGGAGCCTTCAGTTATTCTAATGATATTGGCTGCAAATGCAGCTGTGGGGGTGATTACAGAAACAAATGCTGAAAAAGCTCTTGAGGAACTACGGGCCTATCAAGCTGATGTTGCTATTGTACTCCGAAATGGTTGTTTTTCCATACTCCCAGCTACTGAAATTGTTCCTGGTGATATTGTGGAAGTTTCTGTTGGGTGCAAAATTCCTGCTGATATGAGGATGATCGAGATGCTGAGTAATCAAGTACGTGTTGATCAGGCTATTCTTACAGGTGAGAGCAACTCTGTGGGAAAAGAGCTTGAAATTACCACAGCAACAAAGGCTGTATACCAAGACAAAACAAATATCTTGTTCTCGGGAACAGTTGTGGTTGCTGGTAGGGCAAGAGCGATTGTGGTGGGAGTCGGTCATAATACTGCCATGGGCAGCATACGTGATTCAATGTTGCAAACAGAAGATGAGGTGACACCATTGAAGAAGAAGCTGGATGAGTTTGGTACCTTTTTGGCCAAGGTTATTGCAGGGATTTGCATATTGGTGTGGATTGTAAATATTGGTCACTTTCGTGACCCTTCTCATGGGGGTTTCTTGCGTGGTGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCTGAAGGGCTCCCTGCTGTTGTTACAACGTGTTTGGCTCTTGGAACAAAGCGGATGGCTAGGTTGAATGCTATTGTTCGGTCTTTGCCATCTGTTGAGACATTGGGCTGCACTACTGTAATTTGCAGTGACAAAACTGGAACTCTGACAACGAATATGATGTCTGTTGCGAAGGTGTGCGTGGTTCACTCTGCAAAACATAACCCTGTAGTTACTGAATACAGTGTTAGTGGAACAACATATGCACCTGAAGGCATAATCTTTGACAGTTCAGGGATGCAGCTTGACTTTCCAGCTCAGCTGCCATGTCTTCTTCACACAGCAATGTGTTCAGCCCTATGCAACGAGTCCATCCTGCAGTATAACCCTGATAAAGGGAAGTATGAAAAAATTGGAGAGTCAACTGAAGTGGCACTTCGTGTCCTGGCAGAAAAGGTTGGTCTCCCTGGTTTTGATTCCATGCCATCAGCCTTGAACATGTTGAGCAAGCATGAACGTGCATCTTACTGTAATCATTATTGGGAGGAACAATTTAGAAAGGTAGATCTTTTGGATTTTTCTCGAGATCGGAAAATGATGAGTGTCCTTTGCAGCCGAAATCAGCTACATGTGTTGTTCTCCAAGGGCGCCCCAGAGAGTATCATGTCTAGATGTTCAACCATCTTGTGCAATGATGATGGTTCCATTATGCCATTTACTGCTGATATTCGAGCTGAGCTAAACTCAAGGTTCCACAGTTTTGCAGGAAAAGAAACATTGAGATGCCTAGCATTGGCCCTGAAATGGATGCCTTCTGGCCAACAACGTCTTTCCTATGATGATGAGAAAGATCTCACATTTATTGGGTTGGTTGGAATGCTTGATCCACCAAGAGATGAAGTAAGAAACGCCATGCTTTCATGCATGACTGCTGGCATACGTGTTATAGTTGTTACCGGGGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCACTTGTTGGAATTTAATGAACATTCTTATACTGCTTCTGAGTTTGAAGAACTTCCAGCTCTGCAGCAAACCCTTGCCTTGCAACGTATGTCACTTTTCACCAGGGTTGAGCCATCACATAAACGGATGCTGGTTGAAGCATTACAGCACCAGAATGAAGTGGTTGCTATGACTGGTGACGGTGTCAATGATGCTCCTGCACTGAAGAAGGCTGACATAGGAATTGCTATGGGTTCAGGTACAGCTGTTGCCAAGAGTGCTTCAGACATGGTGCTGGCCGATGACAACTTTGCTTCAATTGTTGCGGCTGTAGCAGAGGGAAGGGCCATATACAACAATACAAAGCAGTTTATTAGATACATGATCTCTTCTAATATTGGTGAAGTAGTCTGTATATTTGTGGCAGCTGTGCTTGGAATTCCTGATACCCTTGCCCCTGTCCAGCTGCTTTGGGTCAATTTGGTTACTGATGGATTGCCTGCCACTGCTATCGGCTTTAATAAGCCAGACTCTGATGTGATGAAGGCCAAACCTCGTAAGGTGAATGAAGCAGTTGTTACAGGGTGGCTGTTCTTCCGTTATCTAGTAATTGGAGCTTACGTTGGCCTTGCCACTATTGCTGGTTTCATTTGGTGGTTTGTTTACTCAGATAGTGGCCCTAAACTACCATACACTGAACTGATGAATTTTGAGACTTGCCCAACAAGGCAGACAACTTATCCATGCAGTATATTCGATGATCGACATCCATCTACTGTAGCAATGACTGTGCTTGTCGTTGTTGAGATGTTCAATGCTTTGAACAATCTTAGTGAGAATCAGTCTCTTCTGGTTATCCCTCCATGGAGTAACTTATGGCTTGTTGGTTCAATTATTCTTACTATGCTTCTTCACATACTAATTTTGTATGTGCACCCTCTCTCAGTTCTTTTCTCTGTAACACCATTATCCTGGGCTGACTGGATGGTTGTCCTGTATCTTTCATTACCCGTTATATTTATTGATGAGGTGTTAAAGTTCTTCTCCAGACATCCCATTGGTCTGAGGTTCAGATTATGGTTCAGAAGGCCTGATTTACTCCCAAAAAGAGAATTGCGTGATAAGTAA 3087 0.4373 MGRTNNSLVGPTGAILGLVRSLTLNSDPIPHSSMDDAYARSIPEVLDFFGVDPTKGLSDAQVVQHARLYGTNGAPFLKLVLKQFDDLLVKILIAAAIISFILALINGETGLMAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVAIVLRNGCFSILPATEIVPGDIVEVSVGCKIPADMRMIEMLSNQVRVDQAILTGESNSVGKELEITTATKAVYQDKTNILFSGTVVVAGRARAIVVGVGHNTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICILVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKVCVVHSAKHNPVVTEYSVSGTTYAPEGIIFDSSGMQLDFPAQLPCLLHTAMCSALCNESILQYNPDKGKYEKIGESTEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHYWEEQFRKVDLLDFSRDRKMMSVLCSRNQLHVLFSKGAPESIMSRCSTILCNDDGSIMPFTADIRAELNSRFHSFAGKETLRCLALALKWMPSGQQRLSYDDEKDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLLEFNEHSYTASEFEELPALQQTLALQRMSLFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKPDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFVYSDSGPKLPYTELMNFETCPTRQTTYPCSIFDDRHPSTVAMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVGSIILTMLLHILILYVHPLSVLFSVTPLSWADWMVVLYLSLPVIFIDEVLKFFSRHPIGLRFRLWFRRPDLLPKRELRDK 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1716 1028 Pfam Cation transporter/ATPase, N-terminus 39 99 IPR004014 -
Dere05g1716 1028 SFLD Haloacid Dehalogenase 353 770 - -
Dere05g1716 1028 FunFam Sodium/potassium-transporting ATPase subunit alpha 611 757 - -
Dere05g1716 1028 Pfam Cation transporting ATPase, C-terminus 802 1001 IPR006068 -
Dere05g1716 1028 Gene3D - 382 619 IPR023299 GO:0000166
Dere05g1716 1028 PANTHER CALCIUM-TRANSPORTING ATPASE 41 1004 - -
Dere05g1716 1028 Pfam E1-E2 ATPase 149 351 - -
Dere05g1716 1028 CDD P-type_ATPase_SERCA 38 1003 - -
Dere05g1716 1028 Gene3D - 82 1003 - -
Dere05g1716 1028 PRINTS P-type cation-transporting ATPase superfamily signature 741 753 - -
Dere05g1716 1028 PRINTS P-type cation-transporting ATPase superfamily signature 634 644 - -
Dere05g1716 1028 PRINTS P-type cation-transporting ATPase superfamily signature 718 737 - -
Dere05g1716 1028 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Dere05g1716 1028 PRINTS P-type cation-transporting ATPase superfamily signature 372 386 - -
Dere05g1716 1028 PRINTS P-type cation-transporting ATPase superfamily signature 612 623 - -
Dere05g1716 1028 NCBIfam HAD-IC family P-type ATPase 689 803 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere05g1716 1028 NCBIfam HAD-IC family P-type ATPase 119 396 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere05g1716 1028 Pfam Cation transport ATPase (P-type) 442 551 - -
Dere05g1716 1028 FunFam Calcium-transporting ATPase 382 619 - -
Dere05g1716 1028 FunFam Calcium-transporting ATPase, putative 237 368 - -
Dere05g1716 1028 Coils Coil 138 158 - -
Dere05g1716 1028 Pfam haloacid dehalogenase-like hydrolase 610 732 - -
Dere05g1716 1028 SUPERFAMILY HAD-like 605 766 IPR036412 -
Dere05g1716 1028 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 714 1007 - -
Dere05g1716 1028 SMART Cation_ATPase_N_a_2 36 104 IPR004014 -
Dere05g1716 1028 Gene3D - 369 762 IPR023214 -
Dere05g1716 1028 FunFam Calcium-transporting ATPase 139 264 - -
Dere05g1716 1028 NCBIfam calcium-translocating P-type ATPase, SERCA-type 80 873 IPR005782 GO:0005388|GO:0006816|GO:0016020
Dere05g1716 1028 SUPERFAMILY Calcium ATPase, transduction domain A 151 262 IPR008250 -
Dere05g1716 1028 Gene3D - 55 264 - -
Dere05g1716 1028 SUPERFAMILY Calcium ATPase, transmembrane domain M 35 1004 IPR023298 -
Dere05g1716 1028 ProSitePatterns E1-E2 ATPases phosphorylation site. 374 380 IPR018303 -
Dere05g1716 1028 SFLD p-type atpase 353 770 IPR044492 -
Dere05g1716 1028 PRINTS H+-transporting ATPase (proton pump) signature 690 706 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere05g1716 1028 PRINTS H+-transporting ATPase (proton pump) signature 749 774 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere05g1716 1028 PRINTS H+-transporting ATPase (proton pump) signature 718 734 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere05g1716 1028 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 379 616 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1716 Dere-ChrDere05 26840418 26865404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1716 34 1028 Primary Pumps ATPases(2) AT1G10130 84.016 0.0 1719