Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1708 ATGGCATTTGCGGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGCTAACTGCGGATAACCGAGTGTACCACAAAGCTTGCTTCCGATGCCACCACTGCAAAGGAACCCTCAAGCTTAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGTAGGCCACATTTCGACCAACTGTTCAAAAGAACTGGTAGTCTCGATAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAACAAATTGACAATGAGAAACCTGCAGCAACCAAAGTCTCAAGTATGTTTGGTGGTACCAGAGATAAATGTGCTGGTTGTCAGAAAACAGTCTACCCAACTGAAAAGGTTACGGTGAATGGCACTCCTTACCACAAGAGCTGTTTCAAATGCTGCCATGGAGGGTGTGTTATAAGTCCTTCAAACTACATTGCGCACGAGGGTAAACTTTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAGCTTGAAGGTGATCATGACAAGAGTGCAACGCATGACCAAATCAATGGGGAAGAAGTGGCTGCCTAG 588 0.4422 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKQIDNEKPAATKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHDKSATHDQINGEEVAA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1708 195 Gene3D Cysteine Rich Protein 105 174 - -
Dere05g1708 195 Gene3D Cysteine Rich Protein 4 74 - -
Dere05g1708 195 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Dere05g1708 195 MobiDBLite consensus disorder prediction 174 195 - -
Dere05g1708 195 SMART lim_4 109 161 IPR001781 -
Dere05g1708 195 SMART lim_4 9 61 IPR001781 -
Dere05g1708 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Dere05g1708 195 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Dere05g1708 195 PANTHER OS06G0237300 PROTEIN 4 95 - -
Dere05g1708 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Dere05g1708 195 CDD LIM2_SF3 110 170 - -
Dere05g1708 195 FunFam LIM domain and actin-binding 1 4 74 - -
Dere05g1708 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Dere05g1708 195 CDD LIM1_SF3 6 68 - -
Dere05g1708 195 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Dere05g1708 195 Pfam LIM domain 110 164 IPR001781 -
Dere05g1708 195 Pfam LIM domain 10 64 IPR001781 -
Dere05g1708 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Dere05g1708 195 FunFam LIM domain and actin-binding 1 104 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1708 Dere-ChrDere05 26770051 26771653 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Dere05g1708 LIM 1.5e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1708 05 26770051 26771653 Dere04g0342 04 3369225 3371541 CCT
Dere05g1708 05 26770051 26771653 Dere05g1708 05 26770051 26771653 ECH