Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1702 ATGGGTGCAATGGCGGCCTCGGATGCAGCGTCGTGCACAGATGCAATTCGCAAATATGCAACAATCGGTACTAGAAAAGATAAAGGTTTGATTCTCGACGTCAGAAATCGTCTTCTCGAACTGGGCTGGAAAATCCACTGTTCTCAAGATGCCGGTCCACCTAAGTACTCTTATATGTCGCCGGCCGGCAAGACTTACTATTCTCTTAAGAAACTCTGTCAAGATTTTGCCTCCGAATCTCTAGTTTCTGATGAATACGATTGTTATTCATTTTTGCTTGATTCTCCTCAGCATGAGGGTTTGTTGCTTGATGAACAAGCAAGAGAGGGCAAAACTCCTTTTCGGGATTTGGAGGCTTATGCTTCTATTTCTGAACTTGAGCCTGAACCTGATGCACTCGTTGTTGAATCCGAATATTGTCCTCAAGCAGTGATTGACTGGTATATGCTTTCTGGACAAGAAGATTTTAAGACCAAGGGCAAAACCTTTTTATCACGCGCTTTGTCCTTAAAAGCGAAGAAGCATCTTCGTGCTTTGGGATGGACGTTCTGGTATGCTGACAAGAAAGGAAGGCAGGAGTTGCGCTATAAATCTCCTCACACTGGCAAGAATTATTACTCTCTCAGAATGGCCTGCAAATGCTGCATAGAAGAGGGAGGATGCGGGTCTAAAAATGTTTCCTCGAATCACGAACCTTCGACTGTCGTTATTGCGAGTCCTGAAATTGAGTTCCCTTCAACTAATACAACTGCACCTTCTGCGGAAACAGGCATTGTACAAACGACTTTGAAGAAGCCAGCAAGAAGATGCGGGAAGAGAAAAAGAGAGTCATTGGATGATGATTATGAATGTCCGATTGGTCATTCTCAAGCCGAATTAGATGCCTTCAGTTTCGTAGGTGGTAAACGAGGTAGACAACTACGATCAAGCATAAGAGTAAGAAAGGGAAATGAGTCAGCGACTTCTGAATCAGTACAGCGCAATCCTCGAACAGTCGTCTCATGGTTGATAGACAACGAAGTTGTATTGCCAGGGGCACAAGTTTATTACCCTAATGGAAGGGAAGGGGTGAAGAAAGGAAGGGTCTTTGGTAATGGAATCAAATGCGATTGTTGCGGTGAGGAGTTCACCCTTAGTAGATTTGAAGCTCATGCTGGGAGTACAAAACACAGACCAGCTGCCAATATTTTCTTGGAAGATGGTAGGTCATTGTTGGATTGCCAAAAGGAAGCCTTGCGAATTCATGGGGTAAAAAGCTTGAATTCACAGAGGAAGGATTTGGTGAAGGATAAAAAATATCAGGATCAAAATGACAACGTTTGTTCTGTTTGTCGTTATGGGGGTGAAATAATTCTATGTGATCGATGTCCGTCCTCATTTCACCAAAGCTGCCTGGGTCTTGCAGAAATTCCTAATGATGATTGGTTCTGCCCTTCATGCTGTTGCAAAATATGCAGCCAAGGCAGATATGAAGAAGATTCTAATGATTGCGTGGATAATAGTTTTCTCGTTTGTGACCAATGTGAACGTAAATATCATATTGGATGCCTGAAAAGTAGAGGGTGTACCAAGCTGAAAAACTATCCTAATGAAAGTTGGTTCTGTAGCGGAGATTGTGAAAATATATTTTTGGGACTGCAGAATATGTTAGGAAAACCATTTTCTGTCGGAATAAATAATCTAACCTGGACGTTACTAAAGACCAGGGAAGCCAAAGGCTCTGAAGCTGATACTTCTGATATTGATTCCTTGACACAGACTGAGAGCAAGTTGAATGTGGCTCTTGAAGTTATGCACGAGTGTTTTGAGCCAGTCAGTGAAGCTCGTACTGGGAGAGATATTGTTGCAGATGTTATTTTCAGTAGAGGTTCAGAACTCAGTCGTTTGAACTTTCGAGGCTTCTATACTGCAATTCTGGAGAGAAACGACGAAGTCATCACAGTTGCCACTGTAAGGATTTATGGGCAAAAGGTTGCAGAAGTGCCTCTTGTGGCCACCAGGTTCCAGTTTCGAAGACTTGGAATGTGTCGTATTTTGATGGATGAGCTTGAGAAGAAGTTGAGTGACTTGGGTGTAGAGAGAATATTTTTGCCTGCTGCTCATAATGTACTGAGCACGTGGACAAATTCGTTTGACTTTGCAAGGATGACAGATTCTGAGAGGTCTCAATTTCTGGAGTATACTTTTTTGGACTTCCAAGACACCATCATGTGCCAGAAATTATTGAAGAAACCGACAATGGAAACTAGAGAAGTCAGGCCTAAACCCTGTGTTGATCTGCGGCAGAACCATCTTCTATCTGGGACGGTCAGCTGCATCACCGAGACTTGTTACTAG 2337 0.4296 MGAMAASDAASCTDAIRKYATIGTRKDKGLILDVRNRLLELGWKIHCSQDAGPPKYSYMSPAGKTYYSLKKLCQDFASESLVSDEYDCYSFLLDSPQHEGLLLDEQAREGKTPFRDLEAYASISELEPEPDALVVESEYCPQAVIDWYMLSGQEDFKTKGKTFLSRALSLKAKKHLRALGWTFWYADKKGRQELRYKSPHTGKNYYSLRMACKCCIEEGGCGSKNVSSNHEPSTVVIASPEIEFPSTNTTAPSAETGIVQTTLKKPARRCGKRKRESLDDDYECPIGHSQAELDAFSFVGGKRGRQLRSSIRVRKGNESATSESVQRNPRTVVSWLIDNEVVLPGAQVYYPNGREGVKKGRVFGNGIKCDCCGEEFTLSRFEAHAGSTKHRPAANIFLEDGRSLLDCQKEALRIHGVKSLNSQRKDLVKDKKYQDQNDNVCSVCRYGGEIILCDRCPSSFHQSCLGLAEIPNDDWFCPSCCCKICSQGRYEEDSNDCVDNSFLVCDQCERKYHIGCLKSRGCTKLKNYPNESWFCSGDCENIFLGLQNMLGKPFSVGINNLTWTLLKTREAKGSEADTSDIDSLTQTESKLNVALEVMHECFEPVSEARTGRDIVADVIFSRGSELSRLNFRGFYTAILERNDEVITVATVRIYGQKVAEVPLVATRFQFRRLGMCRILMDELEKKLSDLGVERIFLPAAHNVLSTWTNSFDFARMTDSERSQFLEYTFLDFQDTIMCQKLLKKPTMETREVRPKPCVDLRQNHLLSGTVSCITETCY 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1702 778 Gene3D - 575 732 - -
Dere05g1702 778 ProSiteProfiles Zinc finger PHD-type profile. 438 483 IPR019787 -
Dere05g1702 778 Pfam Tify domain binding domain 360 411 IPR032308 -
Dere05g1702 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 542 IPR013083 -
Dere05g1702 778 PANTHER PHD FINGER PROTEIN 12 137 763 IPR042163 GO:0003714|GO:0045892
Dere05g1702 778 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 590 702 IPR016181 -
Dere05g1702 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 415 482 IPR013083 -
Dere05g1702 778 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 579 742 IPR000182 GO:0016747
Dere05g1702 778 Pfam PHD-finger 440 482 IPR019787 -
Dere05g1702 778 SUPERFAMILY FYVE/PHD zinc finger 428 482 IPR011011 -
Dere05g1702 778 SMART PHD_3 440 481 IPR001965 -
Dere05g1702 778 SMART PHD_3 482 540 IPR001965 -
Dere05g1702 778 CDD NAT_SF 638 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1702 Dere-ChrDere05 26736531 26738867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1702 287 690 PHD Transcription Factor Family AT5G58610 47.188 6.79e-116 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere05g1702 TDBD 2.2e-23 No_clan