Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1696 ATGGGAACGGAGAGTCCCGCGAATTACACATACATGGGGAGGAGTATCAATGAATTGAGTATCAATGATAATTCCTCTTCTGCCTTCAGCGATTGCAACAGTGACAGATCTGGTGAATTTCCCACGGCTTCTTCCCAAAGCCGAAGCCTCCTGATTGCCTGTGCTTCCGACAATTCTGACGATTTTATTCGCCAGCTGGTAACCGATCTCCAGTCCTCTTCGATTGACGAGCAAAAGCAAGCTGCCATGGAGATCAGACTACTGGCCAAGAACAAGCCGGAAAACCGCCTTAAAATGGCCAAAGCTGGCGCAATTAAGCCGTTGATTTCGCTAATGTCTTCACCTGACCTTCAACTGCAAGAGTACGGCGTTACGGCGATTTTGAATCTCTCACTATGTGACGAGAACAAGCAGCTTATAGCATCGTCGGGAGCGATAAAGCCTCTGGTTCGAGCCCTCAAAACAGGGACATCAACGACTAAAGAGAACGCGGCTTGTGCTCTGCTTCGCCTCTCGCAAATAGAAAAGAACAAGGTCGCTATTGGAAAGTCCGGAGCCATTCCTCTCCTAGTGAACCTTCTAGAGAGCGGGGGTTTCCGCGGTAAAAAGGACGCCTCGACGGCTCTGTACTCCCTCTGTTCGGTAAAGGAGAACAAAATAAGGGCGGTGCAAGCAGGAATAATGAAACCATTAGTGGAATTAATGGCTGATTTTGGATCAAATATGGTGGATAAATCAGCGTATGTGTTGAGCGTGCTTGTATCGGTGCCGGAGGCAAGGACGGCGTTGGTGGAGGAAGGAGGAATTCCGGTGCTGGTGGAAATCATAGAGGTGGGGTCCCAAAGACAGAAGCAAATAGCAGTGGTTATACTATTACAGATTTGCGAGGACAACGTTGCCTACCGTACTTTGGTGGCTCGCGAAGGAGCGATACCTCCGTTGGTGGCTTTGTCGCAGTCCGGCGCCAATAGCTCGAAGGAAAAGGCGGAGACACTAATAGAGCTTCTACGGCAACCAAGATCCGGCAACGCCGCTGCCCGTGCGTCGGAGGTCTCACCGAAGAGGTCTGGATTCCGGAAGGGTCGTTGGAGGAGTGAGTTTTGGTTTTGGTCGCGTAAGAAACTAGAACGATTTGGAAGGAGTCCACATGGTTCGCGTGGACGAGGGCAAATCACAAAACGAGGCGCTAGGAAGGCCTGA 1200 0.5067 MGTESPANYTYMGRSINELSINDNSSSAFSDCNSDRSGEFPTASSQSRSLLIACASDNSDDFIRQLVTDLQSSSIDEQKQAAMEIRLLAKNKPENRLKMAKAGAIKPLISLMSSPDLQLQEYGVTAILNLSLCDENKQLIASSGAIKPLVRALKTGTSTTKENAACALLRLSQIEKNKVAIGKSGAIPLLVNLLESGGFRGKKDASTALYSLCSVKENKIRAVQAGIMKPLVELMADFGSNMVDKSAYVLSVLVSVPEARTALVEEGGIPVLVEIIEVGSQRQKQIAVVILLQICEDNVAYRTLVAREGAIPPLVALSQSGANSSKEKAETLIELLRQPRSGNAAARASEVSPKRSGFRKGRWRSEFWFWSRKKLERFGRSPHGSRGRGQITKRGARKA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1696 399 MobiDBLite consensus disorder prediction 379 399 - -
Dere05g1696 399 FunFam RING-type E3 ubiquitin transferase 51 342 - -
Dere05g1696 399 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Dere05g1696 399 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
Dere05g1696 399 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515
Dere05g1696 399 SUPERFAMILY ARM repeat 59 329 IPR016024 -
Dere05g1696 399 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Dere05g1696 399 PANTHER U BOX DOMAIN-CONTAINING 62 337 - -
Dere05g1696 399 Gene3D - 200 340 IPR011989 -
Dere05g1696 399 Gene3D - 34 198 IPR011989 -
Dere05g1696 399 SMART arm_5 215 255 IPR000225 GO:0005515
Dere05g1696 399 SMART arm_5 298 337 IPR000225 GO:0005515
Dere05g1696 399 SMART arm_5 256 296 IPR000225 GO:0005515
Dere05g1696 399 SMART arm_5 92 132 IPR000225 GO:0005515
Dere05g1696 399 SMART arm_5 174 214 IPR000225 GO:0005515
Dere05g1696 399 SMART arm_5 133 173 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1696 Dere-ChrDere05 26689723 26691700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1696 63 344 U-box Gene Family AT2G23140 49.645 3.80e-84 267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1696 05 26689723 26691700 Dere04g0330 04 3287450 3289097 CCT