Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1690 ATGGCGGTGCTACCACAGCCGGCTGCTGTGGACCAAATCTCGTTCAGACCGCCCCCTCTCTTTAGTTCCAATTACAGCTCACTCATCCAATTCAACTCAAACCAACATCTCACCGATCTTCTCTTCTCTGTCTCTTGCTTCCACATAGCAGCTTTGGTTTTTGTTTTGAGGTCAGGTCGGATCAGATCAGATCACATGGCTCTGGAAGCTCTCAAATCACCCACCACCGCTCCCACATCCTTCCCTTTCGAATTGGACTCCAACCTTCACTCCTTGGAGCCATGGACCAAGCGCAAGCGTTCCAAGCGCACCCGTTTTGACCAAGTTTCTTGCACCGAGGAAGAGTATCTAGCTCTCTGCCTTATCATGCTGGCTCGCGGCGGCTCCGGTGTCTCCGCTACCAATCCCACCGCCTTTGACCGCCATAGCTCCCCTCAGGGTACTCCTCCTCCTGCTGCTGTATCCGAGTCAGCGCCGCTTACCGCACCAGATCCAACCACGGCTCCCAAGCTCAGTTACAAGTGCTCGGTTTGCGACAAAGCCTTCTCCTCTTACCAAGCTCTTGGAGGACACAAGGCCAGTCACCGGAAAATCGCAGCAGGAGTTGGCGCCGGGGAAGATCAGTCCACCTCCTCGGCTGTCACAAGTACTTCTGCAAACACCACCATCACTGCATCCAACGCTGGGGGTAAAGCCCATGAGTGTTCAATCTGCCACAAGTCCTTCCCCACCGGGCAGGCCTTGGGGGGACACAAACGCTGCCACTACGACGGCGGTGCTGGGGCCGGTGGCGGCGGAAACAGTGCTATCACCGCCTCGGAAGGGGTTGGGTCCACCCATACCGCCAGCCACAGCCACCGGGACTTCGACTTGAACCTTCCCGCTTTGCCCGATTTTTCAGCCAAGTTCTTCATGTCCGGGGACGACGAGGTGGAGAGCCCTTTGCCAGTGAAAAAGCCTCGCCTTCTGCTAGCTCCCAAAATCGAAATCCCTCAAGACCACTGA 1005 0.5642 MAVLPQPAAVDQISFRPPPLFSSNYSSLIQFNSNQHLTDLLFSVSCFHIAALVFVLRSGRIRSDHMALEALKSPTTAPTSFPFELDSNLHSLEPWTKRKRSKRTRFDQVSCTEEEYLALCLIMLARGGSGVSATNPTAFDRHSSPQGTPPPAAVSESAPLTAPDPTTAPKLSYKCSVCDKAFSSYQALGGHKASHRKIAAGVGAGEDQSTSSAVTSTSANTTITASNAGGKAHECSICHKSFPTGQALGGHKRCHYDGGAGAGGGGNSAITASEGVGSTHTASHSHRDFDLNLPALPDFSAKFFMSGDDEVESPLPVKKPRLLLAPKIEIPQDH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1690 334 Gene3D Classic Zinc Finger 171 255 - -
Dere05g1690 334 SUPERFAMILY beta-beta-alpha zinc fingers 173 255 IPR036236 -
Dere05g1690 334 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Dere05g1690 334 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 100 297 IPR044653 GO:0003700
Dere05g1690 334 MobiDBLite consensus disorder prediction 134 165 - -
Dere05g1690 334 SMART c2h2final6 233 255 IPR013087 -
Dere05g1690 334 SMART c2h2final6 173 195 IPR013087 -
Dere05g1690 334 Pfam C2H2-type zinc finger 173 197 - -
Dere05g1690 334 Pfam C2H2-type zinc finger 232 257 - -
Dere05g1690 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 195 IPR013087 -
Dere05g1690 334 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Dere05g1690 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 255 IPR013087 -
Dere05g1690 334 MobiDBLite consensus disorder prediction 134 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1690 Dere-ChrDere05 26618384 26619943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1690 66 330 C2H2 Transcription Factor Family AT1G27730 49.630 9.68e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere05g1690 zf-C2H2_6 7.7e-13 CL0361