Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1689 ATGAGCTGCAGTGGTTGCCGAGCCCTCCGAAAGGGATGCAGCGAGAACTGCTCTCTGAGGTCGAGCCTGCGGTGGATTGAATCCCCTGAAGCACAAGCCCATGCCACTCTCTTCCTTGCCAAATTCTTCGGCCGTAGCGACCTCATCTCCTTCATATCCTCCGTCCCTGAATCCAACAGACCAGCCCTGTTTCAGTCTCTGCTATTGGAAGCGTGTGGGAGAACGGTAAATCCTGTGAACGGTGCCGTTGGACTCCTGTGGAGTGGCAATTGGCACGTGTGCCGGGTGGCCGTGGAGACAGTCCTCGCCGGAGGTGTTCTTCGGCCGTTACCGGAGATTCTTGGTAGAGTTCTGGCTCCGATGTTGGATGAGCCGTTTGAAACCGTCAGTAAGAATGTTTACGATGCAGAATTTCGGCCACCGTTCGTGCATGATCTCAGAGAGATGAATCAGAAGCAGGACTTCGATCTTTCGCTGATTCCGGAGTCTTACAAGTACAGCAGTGTAACATCGGTTACAGGGGAGTCGGTGATGACGAGCAGTGGCAGTTGCCGCGGCCAGAAGAAAAGGCTTTTGAATCTGTTCGTTTAG 591 0.5381 MSCSGCRALRKGCSENCSLRSSLRWIESPEAQAHATLFLAKFFGRSDLISFISSVPESNRPALFQSLLLEACGRTVNPVNGAVGLLWSGNWHVCRVAVETVLAGGVLRPLPEILGRVLAPMLDEPFETVSKNVYDAEFRPPFVHDLREMNQKQDFDLSLIPESYKYSSVTSVTGESVMTSSGSCRGQKKRLLNLFV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1689 196 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Dere05g1689 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 116 - -
Dere05g1689 196 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1689 Dere-ChrDere05 26612403 26613128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1689 1 114 AS2 family AT3G49940 77.193 1.50e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere05g1689 LOB 7.5e-23 No_clan