Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1678 ATGAGACCGCAGACCCGGGAAGATGAATCCCAAGAAGACGACGACCGGAACGAAGAAGTGAACCGGTTGCTTCAACCCCAATTTGAATCAAGACCGTCGTCATCGGACGAAGAAGAGGCCGCTTATGAAACAGGCGAGAAAATTCTCATAGTAGATTTGGACTCTGCCGACGACAAGGATTCAACGACGGTGCCACCTTTCTCCTGGAAGAAGCTATGGCTTTTCACCGGACCGGGGTTCTTGATGAGCATAGCTTTTCTGGATCCGGGAAATCTCGAAGGAGATCTCCAGGCTGGAGCCATCGCCGGCTACTCTCTGCTCTGGCTTTTGATGTGGGCCACAATTATGGGCTTGATGATTCAGCTTCTTTCCGCAAGGGTCGGGGTGGTCACTGGTCGGCACCTGGCGGAGCTGTGCAGGGACGAATATCCTAATTGGGCTAGGTTGGTGTTGTGGTTCATGGCCGAGCTGGCCTTGATTGGTGCTGATATTCAAGAGGTCATTGGGAGTGCTATAGCTATACAAATTCTTAGCCATGGGGTGTTGCCGCTCTGGGCTGGAGTCGTAATTACTGCTTCCGATTGTTTCGTCTTTTTATTTCTTGAGAACTATGGAGTAAGGAAGCTGGAAGCTGTTTTTGCAGTTCTCATTGGGACAATGGCCCTTTCTTTTGCCTGGATGTTTGGTGACACAAAACCTAGTGGAAAAGAACTCTTGATGGGTATTTTGGTTCCAAGACTTAGCTCAAAAACAATTCGCCAGGCTGTGGGAGTTGTGGGTTGTGTCATAATGCCTCACAATGTATTCCTGCATTCTGCTTTGGTACAGTCAAGGATGATTGATCCGCAAAAGAAAGGCCAGGTGCAGGAGGCTCTTAACTACTATTCCATTGAGTCAACAGTTGCTCTATCAGTCTCCTTCATGATCAACCTATTTGTCACTACGGTTTTTGCTAAGGGGTTTTACAGTACAAAGCAGGCCAACAGCATAGGATTGGTAAATGCAGGGCAGTATCTTCAGGAAAAGTATGGAGGAGGGCTCTTCCCAATTCTTTATATTTGGGGTATTGGGTTATTGGCAGCCGGACAGAGTAGCACCATTACTGGCACATATGCTGGGCAGTTCATTATGGGAGGTTTTCTGAACCTTCGTTTAAAGAAATGGCTGAGGGCATTAATCACTCGAAGTTTTGCAATTCTGCCAACTATGATTGTAGCTATTGTTTTCAATACATCTGAGGCATCACTGGACATTCTGAATGAATGGCTGAATGTGCTTCAGTCAATGCAAATTCCTTTTGCTCTGATTCCCCTCCTCACCTTGGTCTCAAAAGAGCAGGTCATGGGGAGCTTTAGGGTTGGGCCTGTTCTTGAGAGGGTAGCATGGACTATTGCTGCGCTGATAATGGTGATCAATGGGTATCTATTGTTAGATTTCTTTCTTTCGGAAGTGAACGGTCTGCTGCTTGGACTTGTAGTATGCTCCTGCACGGCTGCTTATGTGGCATTTATTGCATATTTGGTCTCGCTTAGTGGAGCTCTTCCTTTATCTTGGGTTAATCTACTTCCCAAGAGATTTTCTTTTTCAGGGATCTAA 1596 0.4655 MRPQTREDESQEDDDRNEEVNRLLQPQFESRPSSSDEEEAAYETGEKILIVDLDSADDKDSTTVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATIMGLMIQLLSARVGVVTGRHLAELCRDEYPNWARLVLWFMAELALIGADIQEVIGSAIAIQILSHGVLPLWAGVVITASDCFVFLFLENYGVRKLEAVFAVLIGTMALSFAWMFGDTKPSGKELLMGILVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRMIDPQKKGQVQEALNYYSIESTVALSVSFMINLFVTTVFAKGFYSTKQANSIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAILPTMIVAIVFNTSEASLDILNEWLNVLQSMQIPFALIPLLTLVSKEQVMGSFRVGPVLERVAWTIAALIMVINGYLLLDFFLSEVNGLLLGLVVCSCTAAYVAFIAYLVSLSGALPLSWVNLLPKRFSFSGI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1678 531 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 70 448 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere05g1678 531 MobiDBLite consensus disorder prediction 1 22 - -
Dere05g1678 531 Hamap Divalent metal cation transporter MntH [mntH]. 58 480 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere05g1678 531 NCBIfam Nramp family divalent metal transporter 77 446 - -
Dere05g1678 531 Pfam Natural resistance-associated macrophage protein 93 454 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere05g1678 531 MobiDBLite consensus disorder prediction 1 41 - -
Dere05g1678 531 PRINTS Natural resistance-associated macrophage protein signature 255 278 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere05g1678 531 PRINTS Natural resistance-associated macrophage protein signature 151 177 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere05g1678 531 PRINTS Natural resistance-associated macrophage protein signature 362 381 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere05g1678 531 PRINTS Natural resistance-associated macrophage protein signature 390 407 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere05g1678 531 PRINTS Natural resistance-associated macrophage protein signature 206 227 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere05g1678 531 PRINTS Natural resistance-associated macrophage protein signature 424 443 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere05g1678 531 PRINTS Natural resistance-associated macrophage protein signature 181 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Dere05g1678 531 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 54 509 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1678 Dere-ChrDere05 26482136 26486224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1678 7 529 Inorganic Solute Cotransporters AT1G47240 78.937 0.0 832