Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1663 ATGGCTTCTCCAAAGAAAGACCTCGATCGTATTAAAGGCCCATGGAGTCCCGAGGAAGACGAAGCCTTACAAAGACTCGTTCAGAATTACGGCCCTAGAAACTGGTCTCTCATCAGCAAGTCCATTCCCGGTCGATCCGGCAAGTCCTGCCGTTTACGGTGGTGCAATCAGCTCTCTCCCGACGTCGAGCACAGGCCTTTCACGCCCGAGGAGGACGACACTATTATCAGAGCACACGCCAGGTTTGGCAACAAGTGGGCCACAATCGCTCGCCTGCTCCACGGTCGCACCGACAACTCCATCAAAAACCACTGGAATTCCACTCTCAAGAGGAAATGCTCCGCCATCGCCGATCCTTTCAATCCCGAACCCAATGAACACCAGCCTCTCAAAAGATCTGCCAGTGTCGGTGCCGCCACAACTGTTTCCGGTTTGTACTTGAACCCGAGTAGCCCATCCGGCTCCGATTTGAGCGATACTAGTTTGCCCTCTATGTCTCCCACACAGGTTTACAGACCCTTTGCGAGGAACGCTGCCTCAGTTCCCTGCACCCAACTACCGGAAACAGCCACTTCGGTTGTTGATCCACCGACATCATTAAGCCTATCGCTGCCCGGATCCGATTCGCGTGAAGCCTCCAACTATGGATCCGGAACGAATCAGAATGTCAGCCCGACCCAGTTACAGCCGAATCCGCCTTCTGTGACGCCTGCAGCACCAGCTGTGGGAGGATCAGTACAGCAACTGCTTTTGCCAGCTCAGAGCAGTCAGCAATGTGATCAGTTTGGTTATGATAAACCATTCTTCAGCGCCGAGTTCTTGGCGGTGATGCAAGAGATGATAAAGAAGGAAGTGAGGAATTACATGTCTGGGATAGAGCCGAATGGTCTGTGTATGCAGACCGAAGCCATTAGAAATGCTGTGGTGAAGAGTATTGGAATGGGCAGAGTTGAGTAG 957 0.5266 MASPKKDLDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPDVEHRPFTPEEDDTIIRAHARFGNKWATIARLLHGRTDNSIKNHWNSTLKRKCSAIADPFNPEPNEHQPLKRSASVGAATTVSGLYLNPSSPSGSDLSDTSLPSMSPTQVYRPFARNAASVPCTQLPETATSVVDPPTSLSLSLPGSDSREASNYGSGTNQNVSPTQLQPNPPSVTPAAPAVGGSVQQLLLPAQSSQQCDQFGYDKPFFSAEFLAVMQEMIKKEVRNYMSGIEPNGLCMQTEAIRNAVVKSIGMGRVE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1663 318 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Dere05g1663 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Dere05g1663 318 Pfam Myb-like DNA-binding domain 15 72 - -
Dere05g1663 318 FunFam MYB transcription factor 12 63 - -
Dere05g1663 318 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Dere05g1663 318 MobiDBLite consensus disorder prediction 145 164 - -
Dere05g1663 318 SMART sant 63 111 IPR001005 -
Dere05g1663 318 SMART sant 11 60 IPR001005 -
Dere05g1663 318 CDD SANT 14 56 IPR001005 -
Dere05g1663 318 MobiDBLite consensus disorder prediction 188 229 - -
Dere05g1663 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Dere05g1663 318 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Dere05g1663 318 MobiDBLite consensus disorder prediction 188 241 - -
Dere05g1663 318 Gene3D - 65 134 - -
Dere05g1663 318 CDD SANT 66 109 IPR001005 -
Dere05g1663 318 Gene3D - 11 63 - -
Dere05g1663 318 PANTHER MYB PROTEIN-RELATED 12 201 - -
Dere05g1663 318 FunFam Transcription factor MYB44 66 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1663 Dere-ChrDere05 26352809 26353765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1663 9 318 MYB Transcription Factor Family AT5G67300 52.516 6.76e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1663 Myb_DNA-bind_6 9.5e-18 CL0123