Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1660 ATGGCTCATCATCATCATGACAACCCCAGGTTTCATCTGGATGCCTTGTACTGTTCGGAAGAGCATTGGGAGGAACAAGTAGGCCCCGACTATTTCCAACACGAATTAGAACAAGTAGACGAGTGTTTCCTTAGCAGTAACACTCAAATAAAGTCATCTCCGGTGTTGCTAGAACAGGACCTGTTGTGGGATGATGACGAGCTAGCTTCTCTGCTAGCCAAAGAACAACATAACCAACTCTATACATTACTGGAAACTCACCCTCTTCTGCCCGGAGCTCGCGGAGAAGGCGTAGAGTGGATTCTGAAAGTGAATGCTCACTACTCTTTCTCTGCTCTCACCGCCGTTCTCGCCGTCAACTACCTCGATAGGTTCTTGATCAACTTCCAAACTCAGAATGAGAAGCCATGGATGACCCAACTAGCTGCCGTCGCTTGTCTTTCCCTCGCCGCCAAGGTGGAGGAGACTCATGTCCCCCTTTTACTCGACCTCCAAGTAGAGGACAGTAGATACGTTTTCGAAGCCAAAACCATAAAAAGGATGGAGATTTTGGTGCTTTCCACTCTTGGGTGGAAGATGAATCCGGTAACCCCACTCTCATTTCTTGATTATCTCACTCGAAGACTGGGCTTAAGGGATTATCTCTGCTGGGAGTTCCTCAGGAGGTGCCAGGGCATTCTTCTCTGTTTCATTGCCGATTCAAGATTTTTGTGTTATCTTCCTTCTGTGGTGGCGACTGCGACGATGATGCACGTGGTGAATAGTGTGGAAGCCCGTCTAGGAGTTGAATACCAGAATCAGCTGCTGGGTATTCTTGGAATCGACAAGGACAAGGTGGATGAATGCTACAAGCTCATAATGGAAATGACGTCAGGGTACAAGACGAAGCAATCCAACAAACGCACGTTTGGTTCCGTTCCCGGAAGCCCAAATGGCGTGATGGATGCGTCGTTTAGCTGTGACAGCTCCAATGACTCTTGGGCCGTAGCTGCATCCGTTTCGTCCTCGCCGGAGCCTCTCTCCAAGAAGACCAGGACTGGAGATCAGCTTCTACTAAACCATCCTAATTCAGATTCTCTCAGAATTCCTCCCTGA 1095 0.4868 MAHHHHDNPRFHLDALYCSEEHWEEQVGPDYFQHELEQVDECFLSSNTQIKSSPVLLEQDLLWDDDELASLLAKEQHNQLYTLLETHPLLPGARGEGVEWILKVNAHYSFSALTAVLAVNYLDRFLINFQTQNEKPWMTQLAAVACLSLAAKVEETHVPLLLDLQVEDSRYVFEAKTIKRMEILVLSTLGWKMNPVTPLSFLDYLTRRLGLRDYLCWEFLRRCQGILLCFIADSRFLCYLPSVVATATMMHVVNSVEARLGVEYQNQLLGILGIDKDKVDECYKLIMEMTSGYKTKQSNKRTFGSVPGSPNGVMDASFSCDSSNDSWAVAASVSSSPEPLSKKTRTGDQLLLNHPNSDSLRIPP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1660 364 CDD CYCLIN_AtCycD-like_rpt1 93 191 - -
Dere05g1660 364 Pfam Cyclin, C-terminal domain 196 298 IPR004367 -
Dere05g1660 364 CDD CYCLIN_AtCycD-like_rpt2 196 286 - -
Dere05g1660 364 SUPERFAMILY Cyclin-like 62 194 IPR036915 -
Dere05g1660 364 FunFam D3-type cyclin 87 194 - -
Dere05g1660 364 SMART Cyclin_C_2 196 322 IPR004367 -
Dere05g1660 364 SMART cyclin_7 99 187 IPR013763 -
Dere05g1660 364 FunFam CYCLIN D32 195 284 - -
Dere05g1660 364 MobiDBLite consensus disorder prediction 330 364 - -
Dere05g1660 364 Gene3D - 195 284 - -
Dere05g1660 364 Gene3D - 81 194 - -
Dere05g1660 364 SUPERFAMILY Cyclin-like 179 295 IPR036915 -
Dere05g1660 364 PANTHER CYCLINS 71 294 IPR039361 -
Dere05g1660 364 Pfam Cyclin, N-terminal domain 83 194 IPR006671 -
Dere05g1660 364 MobiDBLite consensus disorder prediction 330 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1660 Dere-ChrDere05 26297360 26298724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1660 11 289 Core Cell Cycle Gene Families AT4G34160 52.857 3.74e-95 286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1660 05 26297360 26298724 Dere09g0693 09 9675982 9677434 ECH
Dere05g1660 05 26297360 26298724 Dere13g0474 13 6088475 6089830 ECH
Dere05g1660 05 26297360 26298724 Dere05g1660 05 26297360 26298724 ECH