Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1642 ATGGAAGAAGGAGAGTGTCGTTCGAGGAATTCGACGATGAGAACAAGCAGAAGCAGCCCGGAGAAGCGGAAGCAGCAGAGACAACACCAACAAGCAGGAAAGGAGAAACCATACAGAGGGATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAGATCAGAGAACCCAACAAAAGGTCAAGGATATGGCTGGGTTCTTACACCACTCCGGTCGCCGCCGCACGCGCATACGACACCGCTGTTTTCTATCTTCGAGGCCCTTCCGCTTGTCTTAACTTCCCCGAACTGTTATTCCAAGACGACAACGCTTTCATCCGAGGCGACATGTCCGCCGATTCCATACGCAAGAAAGCCACCGAAGTCGGCGCTAGAGTTGACGCCCTCCAAACCTCCCTTCATGCCTCCTCCCACTCTACTTCTACCCAAACCACCTCCGACAAGCCCGACTTGAATGAGTATCCACAACCCGAAGACTCCCTCGAGGATTAG 489 0.5358 MEEGECRSRNSTMRTSRSSPEKRKQQRQHQQAGKEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSACLNFPELLFQDDNAFIRGDMSADSIRKKATEVGARVDALQTSLHASSHSTSTQTTSDKPDLNEYPQPEDSLED 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1642 162 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Dere05g1642 162 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Dere05g1642 162 MobiDBLite consensus disorder prediction 129 162 - -
Dere05g1642 162 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Dere05g1642 162 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Dere05g1642 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 17 159 - -
Dere05g1642 162 MobiDBLite consensus disorder prediction 1 38 - -
Dere05g1642 162 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Dere05g1642 162 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Dere05g1642 162 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Dere05g1642 162 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Dere05g1642 162 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Dere05g1642 162 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1642 Dere-ChrDere05 26160260 26160748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1642 11 146 AP2-EREBP Transcription Factor Family AT1G46768 62.590 2.14e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere05g1642 AP2 2.6e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1642 05 26160260 26160748 Dere05g1642 05 26160260 26160748 ECH