Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1639 ATGGCGCAAACGCAAGTGCAGCATCTGAACCCCGTGTCTGCTCCCAATGGTCTGGCACCGACCCCGACTGTGAACCAATTCCCGGGTGCATCCTTGTACGTTGGGGATCTCGACCTGAATGTGAACGATTCTCAGCTCTTCGATGTCTTCAACCGGTTTGGTGATGTTCTTTCTGTTCGAGTATGCAGGGACGTTACCAGCCGTCGATCCCTGGGTTACGGTTATGTTAATTACAGTAATGCCCTGGATGCTGCCAGAGCAGTGGATGAACTGAATTTCACTCCACTGAACAACAAACCCATTAGGATTATGTATTCTAATCGGGATCCTAGTGCTCGGAAAAGCGGTACAGCAAATATATTTATCAAGAATTTGGATAAGGCAATTGACCACAAGGCTTTACATGAAACTTTTTCTGCATTTGGAAATATTCTTTCTTGCAAGATAGCAACAGATTCGTCTGGCCAGTCCAAAGGCTACGGTTTTGTTCAATTTGACAAAGAAGAATCTGCGCAGAATGCAATTGATAAGTTAAATGGCATGCTGATGAATGATAAACAGGTCTATGTAGGGCATTTTCTGCGAAAGCAGGATAGGGAAAGTGTTTCAAATAAGGCAAAATTCAATAATGTCTATGTGAAAAACCTGTCAGAGTCAATGACCGATGAAGATTTGAAGAAAACTTTTGGAGAATATGGGACCATTACTAGTGCTGTAGTTATGAGAGATGCAGATGGTAAGTCAAAGTGCTTTGGTTTTGTAAATTTTGAAAATGCAGATGATGCTGCTAAAGCGGTTGAAGCACTTAATGGAAAGAAATTTGATGATAAGGAGTGGTATGTTGGGAAAGCTCAGAAAAAATCTGAAAGGGAGCTTGAGTTGAAAGGACGATTCGAGGAGAGTATGAAGGAAGCTATTGACAAATATCAAGGTGTAAACTTGTATGTCAAGAATTTGGATGATAGCATTGGTGATGAAAAACTAAAGGAAATGTTCAGTGAGTTTGGTACAATAGTTTCTTGCAAGGTTATGCAGGACCCAAGTGGAATTAGTAGAGGTTCTGGATTTGTTGCCTTTTCAACTGCTGAGGAAGCATCTCGAGCTCTTGCGGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTATATGTTGCCTTTGCTCAAAGGAAGGAGGAGAGAAGAGCCAGATTGCAGGCGCAATTTTCACAAATGAGGCCGGTTGCAATGGTTCCTTCTGTGGGCTCTCGTATGCCAATGTACCCTCCTGGTGCTCCAGGCCTAGGACAACAATTTTTGTATGGGCAAGCACCTCCTGCCATCATTCCTCCACAAGCTGGATTTGGTTATCAGCAGCAACTTGTTCCTGGGATGAGACCTGGTGGTGCTCCAATGCCAAACTTTTTTGTCCCAATGGTTCAGCAGGGACCACAAGGTCAGCGCCCTGGGGGACGTCGTGGAGCAGGTCCTGTGCCACAGTCCCAGCCAGTGCCTCTTGTGCAGCAGCAGATGCTTCCAAGGGGACGTGCCTATCGTTACCCTCCTGGTCGCAACATGCCAGATGTTCCAATGCCAGGTGGAGTTGGAGGAATGGTTTCTGTCCCTTATGATATGGGTGGTGTACCAATGCGGGATGCTGTGGCACAACCAATGCCTATTCAGGCCTTGGCTACAGCCCTTGCAAATGCTACACCCGAACAGCAGAGGACTATGCTGGGTGAAGCTTTATACCCTCTTGTAGATCAGCTGGAGCATGATGCTGCAGCTAAGGTTACGGGCATGCTTTTGGAGATGGACCAAACTGAGGTATTGCATCTGATTGAATCACCTGATGCTCTCAAGGCAAAAGTTGCCGAGGCCATGGATGTCTTGAGAAACGTTGCTCAGCAAGTTGACAGCCCAGCCGATCAACTGGCCTCGCTCACGCTGAATGACAATCTTGTCTCTTAG 1947 0.4602 MAQTQVQHLNPVSAPNGLAPTPTVNQFPGASLYVGDLDLNVNDSQLFDVFNRFGDVLSVRVCRDVTSRRSLGYGYVNYSNALDAARAVDELNFTPLNNKPIRIMYSNRDPSARKSGTANIFIKNLDKAIDHKALHETFSAFGNILSCKIATDSSGQSKGYGFVQFDKEESAQNAIDKLNGMLMNDKQVYVGHFLRKQDRESVSNKAKFNNVYVKNLSESMTDEDLKKTFGEYGTITSAVVMRDADGKSKCFGFVNFENADDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEESMKEAIDKYQGVNLYVKNLDDSIGDEKLKEMFSEFGTIVSCKVMQDPSGISRGSGFVAFSTAEEASRALAEMNGKMVAGKPLYVAFAQRKEERRARLQAQFSQMRPVAMVPSVGSRMPMYPPGAPGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGPQGQRPGGRRGAGPVPQSQPVPLVQQQMLPRGRAYRYPPGRNMPDVPMPGGVGGMVSVPYDMGGVPMRDAVAQPMPIQALATALANATPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQTEVLHLIESPDALKAKVAEAMDVLRNVAQQVDSPADQLASLTLNDNLVS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1639 648 Gene3D - 310 413 IPR012677 -
Dere05g1639 648 FunFam Polyadenylate-binding protein 547 629 - -
Dere05g1639 648 SUPERFAMILY RNA-binding domain, RBD 29 199 IPR035979 GO:0003676
Dere05g1639 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Dere05g1639 648 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Dere05g1639 648 Gene3D - 207 309 IPR012677 -
Dere05g1639 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Dere05g1639 648 MobiDBLite consensus disorder prediction 473 495 - -
Dere05g1639 648 SMART poly_2 563 626 IPR002004 GO:0003723
Dere05g1639 648 SUPERFAMILY PABC (PABP) domain 494 632 IPR036053 GO:0003723
Dere05g1639 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Dere05g1639 648 Gene3D - 21 118 IPR012677 -
Dere05g1639 648 SMART rrm2_1 313 385 IPR003954 GO:0003676
Dere05g1639 648 SMART rrm2_1 210 282 IPR003954 GO:0003676
Dere05g1639 648 SMART rrm2_1 31 104 IPR003954 GO:0003676
Dere05g1639 648 SMART rrm2_1 119 191 IPR003954 GO:0003676
Dere05g1639 648 FunFam Polyadenylate-binding protein 199 294 - -
Dere05g1639 648 SMART rrm1_1 210 282 IPR000504 GO:0003723
Dere05g1639 648 SMART rrm1_1 313 385 IPR000504 GO:0003723
Dere05g1639 648 SMART rrm1_1 119 191 IPR000504 GO:0003723
Dere05g1639 648 SMART rrm1_1 31 104 IPR000504 GO:0003723
Dere05g1639 648 FunFam Polyadenylate-binding protein 295 400 - -
Dere05g1639 648 CDD RRM4_I_PABPs 311 389 - -
Dere05g1639 648 SUPERFAMILY RNA-binding domain, RBD 209 393 IPR035979 GO:0003676
Dere05g1639 648 Gene3D - 547 630 - -
Dere05g1639 648 CDD RRM2_I_PABPs 116 192 IPR045305 -
Dere05g1639 648 FunFam Polyadenylate-binding protein 119 192 - -
Dere05g1639 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Dere05g1639 648 Gene3D - 119 206 IPR012677 -
Dere05g1639 648 MobiDBLite consensus disorder prediction 1 21 - -
Dere05g1639 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Dere05g1639 648 PANTHER RNA BINDING PROTEIN 30 92 - -
Dere05g1639 648 CDD RRM3_I_PABPs 208 287 - -
Dere05g1639 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Dere05g1639 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Dere05g1639 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Dere05g1639 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Dere05g1639 648 FunFam Polyadenylate-binding protein 11 113 - -
Dere05g1639 648 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 624 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1639 Dere-ChrDere05 26121021 26125372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1639 1 643 Eukaryotic Initiation Factors Gene Family AT4G34110 67.231 0.0 854