Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1631 ATGGGAGAGCCTCAGTCTCGTTGCGCCTCACTCCCCCCAGGTTGCCGATTCTACCCTTCCGAAGAGCAGCTTCTCTGCTATTATTTAACTAACAAAAACTCCGGAGCCAACGGGGACGGCAATCTTTGTGGTTGCGATTTGATCAGAGAGATTGACCTCTACGACCATGATCCTTTCGAATTGCCTGATATCGCGTCCTTTTCCTATGGTTACCGGGGAAGGAAGAAGCATTGGTACTGTTATACGGTCACGTCTGTGAAGGGAATCCGACGGAAAACTAGGAAGGTCAAAAGTGGATATTGGATGAGACAGGGACGGGTTAGAGATGTTTTAGGTAGTGGTGGAAAGCTGGTTTTGGGCAAGAGGACGAGCTTCGTTTTCTATTTGGGGAATTCGTTGGAAAACGCAGTCAGGACGGATTGGACGCTCTATGAATATGCATTACTTGACCATCTGAAGGCTTCTTTTGTCCTTTGTCGTGTATTTGCAAAGCCTTATTATAAGAGTAGTGCATCAGAGATTGGCCCGAATTCTTGGGTAGAAGAAAGTGTCTCAGCAGTACGTCACATTGGTATTCAGCATGATGGATTCATTGCACCGGATGCTGTTGAAATTAAAGTATGTGATGACAGATCCATTGACAGAAAACAGGATATTTCACTGTATCCACTGAGATGTGCTGATGAACGAGATGATCATAAGGTCCTCACTACGCCTGTTTCTGCTGCTACTTTCCAATGTTCCGGGGGTCCTCATGGTAGTGGAGAGGGAAGGTCTTCTGTACTTTGTGGTGGTGCTGGAATGTTTGTTGAAGCTGTGACATCTCAGCAGCATGTACTCTCCATCTTAGAGGAGGATTTCATAGAGTTAGATGATCTCACATGA 885 0.4588 MGEPQSRCASLPPGCRFYPSEEQLLCYYLTNKNSGANGDGNLCGCDLIREIDLYDHDPFELPDIASFSYGYRGRKKHWYCYTVTSVKGIRRKTRKVKSGYWMRQGRVRDVLGSGGKLVLGKRTSFVFYLGNSLENAVRTDWTLYEYALLDHLKASFVLCRVFAKPYYKSSASEIGPNSWVEESVSAVRHIGIQHDGFIAPDAVEIKVCDDRSIDRKQDISLYPLRCADERDDHKVLTTPVSAATFQCSGGPHGSGEGRSSVLCGGAGMFVEAVTSQQHVLSILEEDFIELDDLT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1631 294 Pfam No apical meristem (NAM) protein 12 148 IPR003441 GO:0003677|GO:0006355
Dere05g1631 294 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Dere05g1631 294 SUPERFAMILY NAC domain 9 164 IPR036093 GO:0003677|GO:0006355
Dere05g1631 294 ProSiteProfiles NAC domain profile. 11 164 IPR003441 GO:0003677|GO:0006355
Dere05g1631 294 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1631 Dere-ChrDere05 26033090 26035148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1631 9 164 NAC Transcription Factor Family AT1G69490 32.353 7.33e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere05g1631 NAM 1.3e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1631 05 26033090 26035148 Dere05g1631 05 26033090 26035148 ECH