Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1629 ATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTGTCTGAAACCTTAGAATTTGATTGTGGATCCACATCAAGTAATCCTTCTGTGGATCAGCAAATTTGCTGGAATAGTATGAGGAATCCTGCAGATAATGATATACCCGAGTATTTACTTCCACTGGGTGATATGAACCCCTCATTTGTGAATTCTATAAACCATGAATGGCAGAACTCTAGTGGATGGAGCTTAGGTGAGCCAAGTTCTAGTAATACACAGAATGAGACTAACAATAGTCAGCAGAAAAGAGAAATTGGATGGTCATCTCCAATTAATGCTGGTGCTGTAGCTGGTCCAAGATCAGAAGGAAGGCACTTTGAACCAACAATTGTTCTTTCAGCAGATAATGTCAATTCAAGTCCTATGTATATGCCCAGCTCCAATTCTCATATGTTGTCACCAAATCTAAACTTAAATGCAGGCTTGGCAGATGGTAGTAGTGATAGTAGTCGGCATTTGGAGCATCCTAGCTTGCCCAAGTCTAGTGGATCAGTAGATGAGCATATTCCACCTAGCATTGGCTCTGGTACACTTCTTCTTCCTTCTGGAAATAACGGCTTCTTGGTAGAAGGCTCAGATGGCCGGTCAGGTTGTTCTCTGGATGCTCGCCGTGTGTCTTGTAAAAGAAAGGCCATTGAAGAAAATGTTGGACCATCTTCGGACAGTGGTAGTTCTAGTTACAGTCAGCATACCGAAAGTAGTGCTTGGCACACTCTTCCTACTCAGGATAATGTTGGGAGCAGTTTAAATAGATCTGCTTCATCTGAACAAGTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGCTTCTGAAAGCCTTCCTGATTCAAATGTTGCAGGGAGCTCAGAAGGTTTCCACAGGAATTTTCGTTTGAGGATAAATCCTTCAGGCCAACAAGATTCAATTCCTCCCTCTGCATTCTCTACTGGGAGTGTGAATAGGCATTCTAATATGTCATCCTCTTCAATGTCACAAAGCTTTCCTCCTGTTGACAATTCCCTGGACTTGAGGTCAGCACCGGTGGTAGATAATATAATTCCTCAAAGCCAGCCCCTTGTGATCCATGTTCCTGCTTTACCAAGGAATGTACAATCATTTAGATGGAATGGTGGTTCTAGCTCAAGAAACAGCCATTCATCAAGTTCAATTATCTGCACAGATAGGGATAATCTACGGCGTGAGGAAGCAAGCTCAAGAAATATGTCTAGAAGCATTTTAGAACGCCCAGTGTTTGTACCTGGAACTGCAACTGATCTAAGAAATCTTGTTCGAAATCCAACAATTAGAGCTTCAAGTAGTGGAAATTTAAGTATGTCAGGAAATGTCGCTTCTACGTCACGGGCTGGATCAAATTCAGCTAACAATCAATCATCTGCCTCAACATGGGTTTCTCGTCCTAATCCTCCACATTATCCACGCAGATTATCTGAATATGTTCGTCGATCATTATTTTCTCCTCCTGAGGCTGTTGGAAGTCCAAGTCCAAGTAATAATTATTCTTTGCGCTCTGGTCCTCCTGCTTCATCTGAAGCAAGGGTGCCATCGTCTACTGCCAGTGGCCATGGACATCCACACCCAAGATCTTCTTTGTGGATGGAGAGGCAAGGTGATGCTGAATTTGGAATTCCCTATTCACTACGAACTTTGGCTACTGCCGGTGAAGGAAGTAGTAGTAGACTAGTTTCTGAGCTCCGCAATGTTTTGGGCCTCATGCGTAGGGGGGGAGGCTTGCAATTTGAGGATGTTATGATTCTTGACCAATCAGTCTTTTCTGGAATGGCCGATATTCATGATCGACACAGGGATATGCGTCTTGATGTCGATAACATGTCTTATGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGCGAGGATACCATATTGAAACTTCTGAAACAGAAGAAGTATTTGCTTGAAACAGGAAAGCGGGAGGCAGAGCCCTGCTGTATTTGTCAGGAAGAGTATAATGACGAAGATGATATTGGAACACTTGATTGCGGGCATGATTACCATACTGACTGTATCAAGCAGTGGCTAATGCACAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCATCGTGA 2145 0.4359 MQGQRGAIGSLSETLEFDCGSTSSNPSVDQQICWNSMRNPADNDIPEYLLPLGDMNPSFVNSINHEWQNSSGWSLGEPSSSNTQNETNNSQQKREIGWSSPINAGAVAGPRSEGRHFEPTIVLSADNVNSSPMYMPSSNSHMLSPNLNLNAGLADGSSDSSRHLEHPSLPKSSGSVDEHIPPSIGSGTLLLPSGNNGFLVEGSDGRSGCSLDARRVSCKRKAIEENVGPSSDSGSSSYSQHTESSAWHTLPTQDNVGSSLNRSASSEQVNARLGLGMGDEASESLPDSNVAGSSEGFHRNFRLRINPSGQQDSIPPSAFSTGSVNRHSNMSSSSMSQSFPPVDNSLDLRSAPVVDNIIPQSQPLVIHVPALPRNVQSFRWNGGSSSRNSHSSSSIICTDRDNLRREEASSRNMSRSILERPVFVPGTATDLRNLVRNPTIRASSSGNLSMSGNVASTSRAGSNSANNQSSASTWVSRPNPPHYPRRLSEYVRRSLFSPPEAVGSPSPSNNYSLRSGPPASSEARVPSSTASGHGHPHPRSSLWMERQGDAEFGIPYSLRTLATAGEGSSSRLVSELRNVLGLMRRGGGLQFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEDTILKLLKQKKYLLETGKREAEPCCICQEEYNDEDDIGTLDCGHDYHTDCIKQWLMHKNLCPICKTTGLAS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1629 714 MobiDBLite consensus disorder prediction 501 528 - -
Dere05g1629 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 711 IPR013083 -
Dere05g1629 714 MobiDBLite consensus disorder prediction 132 157 - -
Dere05g1629 714 FunFam E3 ubiquitin-protein ligase MBR2 636 712 - -
Dere05g1629 714 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 214 712 IPR045191 GO:0061630
Dere05g1629 714 MobiDBLite consensus disorder prediction 228 265 - -
Dere05g1629 714 MobiDBLite consensus disorder prediction 381 413 - -
Dere05g1629 714 MobiDBLite consensus disorder prediction 399 413 - -
Dere05g1629 714 SUPERFAMILY RING/U-box 666 710 - -
Dere05g1629 714 MobiDBLite consensus disorder prediction 498 541 - -
Dere05g1629 714 MobiDBLite consensus disorder prediction 306 341 - -
Dere05g1629 714 MobiDBLite consensus disorder prediction 381 398 - -
Dere05g1629 714 SMART ring_2 667 707 IPR001841 -
Dere05g1629 714 MobiDBLite consensus disorder prediction 70 115 - -
Dere05g1629 714 MobiDBLite consensus disorder prediction 435 482 - -
Dere05g1629 714 MobiDBLite consensus disorder prediction 435 477 - -
Dere05g1629 714 ProSiteProfiles Zinc finger RING-type profile. 667 708 IPR001841 -
Dere05g1629 714 MobiDBLite consensus disorder prediction 70 98 - -
Dere05g1629 714 Pfam Ring finger domain 667 708 IPR001841 -
Dere05g1629 714 MobiDBLite consensus disorder prediction 224 265 - -
Dere05g1629 714 MobiDBLite consensus disorder prediction 132 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1629 Dere-ChrDere05 26021962 26025636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1629 1 714 C3H Transcription Factor Family AT2G15530 33.468 6.90e-82 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1629 05 26021962 26025636 Dere04g0275 04 2786930 2790549 CCT
Dere05g1629 05 26021962 26025636 Dere05g1629 05 26021962 26025636 ECH