Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1628 ATGGCGGATATGTACGGAACGCCTTCCTCTCTGGCCACCGCCTCCGGCATGTCTTCTGACTCCGATGATTTCTCCACCATCTTCACCCACCTCCTCCATACCTCTCCCTCCTCTTGCGTCGCCTCCAAACCCAAGACCTTACCACCGCCGTGGCTTCCTCCGCTGGTGGGGACCACCGGGTTTAGCCAATTGGGGTCGGGCCACCCGCACGATAATGGAAAGTCGGTTGGTTCTTCGGATGCAGTTGCTGATTCTTTCAATTTTTCTGATCCCTATGCTTACGTTCCGGCTGATGAGGAAGAGGCTACTGGAAACGAGCTTCTGCCGACTGGTGTTGACGACTCTGATGAGAATACTTCCTTCAAAGAACAAAGAATTTCGCCGGAGAATGAACCCGGCGATTTCATTTGTCCCGTCGAGAAGAATGCCGAGGAGTCGCAGAGAAAGCGAGTCCCAACAAGTACTTCCTCAAAGAGGAGTAGAGCTGCAGAGGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAGGCCTTGCAAAACTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCAATGCTGGAGGAGGCGATTGAATATTTGAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTCAGCTTGCATCCAATGTGTTTACCAGGAGGACAGCAACCTATGACACTGGCTCAGACCGGGTTGAATTTTGACGAGCCTAATGGATATCAGAATTCTTCCTGCGGAATTGCCTCATCTGCAAATAGCGAATGCTTGGTGCAGCCAGATTTCAATATTCCAAAGCATTGTAGCATATTAGATCAGCCTGTGATCTTGCCCTCACTGACAAACATGACCAATCCAGATACCTCATCTAGATTCAAATTTCATGTTGGACAATTTGACCCTTCTTCATCATCCAAGGATGCACTCTCTGATGGCACACCACAACTGCATTTGGAAACCACAAGAATTAAAAAGAACCCGTCTTCCGATGTGTCTTAG 1032 0.4729 MADMYGTPSSLATASGMSSDSDDFSTIFTHLLHTSPSSCVASKPKTLPPPWLPPLVGTTGFSQLGSGHPHDNGKSVGSSDAVADSFNFSDPYAYVPADEEEATGNELLPTGVDDSDENTSFKEQRISPENEPGDFICPVEKNAEESQRKRVPTSTSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLEEAIEYLKQLQLQVQMLMMRNGFSLHPMCLPGGQQPMTLAQTGLNFDEPNGYQNSSCGIASSANSECLVQPDFNIPKHCSILDQPVILPSLTNMTNPDTSSRFKFHVGQFDPSSSSKDALSDGTPQLHLETTRIKKNPSSDVS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1628 343 MobiDBLite consensus disorder prediction 1 20 - -
Dere05g1628 343 CDD bHLH_AtPIF_like 161 223 IPR047265 -
Dere05g1628 343 MobiDBLite consensus disorder prediction 105 173 - -
Dere05g1628 343 FunFam Basic helix-loop-helix transcription factor 156 219 - -
Dere05g1628 343 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
Dere05g1628 343 SMART finulus 167 216 IPR011598 GO:0046983
Dere05g1628 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Dere05g1628 343 Coils Coil 200 220 - -
Dere05g1628 343 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 19 312 IPR031066 -
Dere05g1628 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 221 IPR036638 GO:0046983
Dere05g1628 343 MobiDBLite consensus disorder prediction 311 343 - -
Dere05g1628 343 Gene3D - 156 220 IPR036638 GO:0046983
Dere05g1628 343 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1628 Dere-ChrDere05 26016986 26019300 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1628 161 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 48.876 1.84e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere05g1628 HLH 1.3e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1628 05 26016986 26019300 Dere05g1628 05 26016986 26019300 ECH