LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g1624	ATGGCTCTGGTGCTAGACAATTGTGAGGGGATATTACTGTCTTTAGACTCACACAAATCGGTGCCGGCTCCGTTCCTGACCAAGACATACCAACTTGTGGATGATCCCACCACGGATCACATTGTGTCTTGGGGGGAAGACGACGCCACCTTCGTCGTTTGGCGTCCCCCTGAGTTCGCTAGAGATCTTCTTCCCAACTACTTCAAGCACAACAACTTCTCTAGCTTTGTTCGCCAGCTCAACACCTATGGTTTTAGGAAGATCGTGCCAGACAGATGGGAGTTCGCAAATGAATTTTTCAGGAAAGGAGAGAAGCAGCTGCTGTGCGAGATTCACAGAAGGAAGACGGCTCAGCCTCATCAGCAGGTACCCATAAATCATCCTCATCATCATCCACTTCCAGGACTCAACGTTCCTACTTTCTTTCCCTTCTCAACCGCCAGAATCAGCGTCTCGCCGTCCAACGACTCCGACGAACAACCACCCAGTTGGTGTGACTCCCCGCCCCTCACATCTCCACGGGGAGGCACTGGTGCCGTCGCTTCGCTCTCCGAGGATAATGAAAGACTGCGGCGAAGCAACAACATGCTCATGTCTGAGCTGGCACACATGAAAAAGCTCTATAACGACATCATCTACTTCGTTCAGAACCATGTCAAGCCTGTTGCTCCCAGCAATTCTTATAACCCTTCTTTGCTCCTATCCAATACATGTACCCCACAGCAACCATCAACTCCCTCTCCTATGCCTACGGCTAATACCAATGTTCCCATGGTGCAAAGGCCAATGAACCAGCTTCTGGGGTATTATTCCACTTCCACTAACCCTAAGCAAACTATCCCTCAACTACCCCATCTTGTGAGCTCTCCCACGAACACGTCAAGAAGCTCCATCACTATTGTGGAAGAGCCCTGCAGTAACGCTAAGCTTTTTGGTGTGTCCCTTCATTCAAGGAAAAGGGTGCACCCTGACTCTGATACTACTCCGTCCAATTCCGACATGAACAAGGCTCGAATAGTCTTGGAAAAAGTTGACTTGGCCTTGAATCTCATGCCTCCTTCCGCTTGTTAG	1071	0.4986	MALVLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRKGEKQLLCEIHRRKTAQPHQQVPINHPHHHPLPGLNVPTFFPFSTARISVSPSNDSDEQPPSWCDSPPLTSPRGGTGAVASLSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYNPSLLLSNTCTPQQPSTPSPMPTANTNVPMVQRPMNQLLGYYSTSTNPKQTIPQLPHLVSSPTNTSRSSITIVEEPCSNAKLFGVSLHSRKRVHPDSDTTPSNSDMNKARIVLEKVDLALNLMPPSAC	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g1624	356	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	18	269	IPR027725	-
	Dere05g1624	356	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1624	356	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1624	356	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1624	356	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1624	356	FunFam	Heat stress transcription factor B-4	17	115	-	-
	Dere05g1624	356	Coils	Coil	180	200	-	-
	Dere05g1624	356	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Dere05g1624	356	Gene3D	-	17	116	IPR036388	-
	Dere05g1624	356	MobiDBLite	consensus disorder prediction	151	165	-	-
	Dere05g1624	356	MobiDBLite	consensus disorder prediction	151	186	-	-
	Dere05g1624	356	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1624	356	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g1624	Dere-ChrDere05	25939513	25940675	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g1624	1	354	HSF	AT1G46264	54.427	2.93e-115	337

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Dere05g1624		HSF_DNA-bind	9.6e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere05g1624	05	25939513	25940675	Dere04g0270	04	2748477	2750119	CCT
	Dere05g1624	05	25939513	25940675	Dere05g1624	05	25939513	25940675	ECH