Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1623 ATGAACAGCGTGGACCTGTTAAAGTCATCTTCTTCAGAGGATAATCAGATGGACATCATGACGATGATGATGCAACTCCCTGAATTCTCTGGAGCCTACAGTAACGACGTCGTCCCTAATGACTTTGCGCTGCCGGAGAACCCCGCCGCTGCAACTACGACGGGCACCGACATACATGGTACCGTGCCACATTTTCTTGACAACCCAGCCATGGCTTCATCGTCTTCATTCACAAACTTACAGTCCACAACAATTTCCTTCGCTAACCCTACCCCTATGCTACAAGAGCAAGCTCCACCAGCTTGCGGAGGAAACGGCTACGGAAGAGCATCAGAGAAAGGGATATCCATGGCGGCGATGAGGGAGATGATATTCAGGATAGCGGCCATGCAACCAATACACATAGACCCAGAGTCAGTGAAGCCGCCAAAGCGGAGGAACGTGAAGATTTCGAAGGATCCTCAGAGCGTGGCGGCTCGCCACCGCAGAGAAAGGATCAGCGAGAGAATAAGGATACTGCAGAGACTGGTGCCGGGAGGGACTAAGATGGACACTGCTTCCATGTTGGACGAAGCCATTCACTACGTCAAATTTCTCAAGACTCAGGTTCAGTCACTCGAGCGCGCTGCCGCCAATAGGCCTCCGGAGATGGGATTCCCTGTGGCAATGTCAACAGCAACTGCCACCTCTTATCTTCCTCTTCCAAAACCTTACCAAGCTCCGCCTCCAAATGTTCCGCATTTCCGAGATGCATAA 756 0.5172 MNSVDLLKSSSSEDNQMDIMTMMMQLPEFSGAYSNDVVPNDFALPENPAAATTTGTDIHGTVPHFLDNPAMASSSSFTNLQSTTISFANPTPMLQEQAPPACGGNGYGRASEKGISMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPPEMGFPVAMSTATATSYLPLPKPYQAPPPNVPHFRDA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1623 251 Gene3D - 149 216 IPR036638 GO:0046983
Dere05g1623 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 213 IPR036638 GO:0046983
Dere05g1623 251 FunFam BHLH transcription factor 153 216 - -
Dere05g1623 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Dere05g1623 251 CDD bHLH_AtIND_like 151 207 - -
Dere05g1623 251 SMART finulus 156 205 IPR011598 GO:0046983
Dere05g1623 251 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Dere05g1623 251 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 64 236 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1623 Dere-ChrDere05 25931986 25932741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1623 117 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 92.632 4.22e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere05g1623 HLH 1.6e-06 No_clan