Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1613 ATGTCTCTATTTCTGTTCTGGTTGGTGCTGCCATTTTTAACATGGTCAAATTCTAAAGCTTATGAAACAGAAGGGAACTGCTCACACTTGCCTCCTAAGATTCTGAACATGGGGGCCGTCATTGACTTCAGTTCACGAGTGGGTAAGGAGCAGAAGACGGCCATGGAAATGGCCATCCAAGATGTCAATAGCCTAACTTGTTTGAAGCTTCTTGTCAACTTCAACGATTCGCATCGCAATACGGCTGGTAACGTTCAATTCCTTTACAGCAAACAAGTCCAACTTGTCATAGAAGCAAAACGCAATGGAGCACATCAGGTGGCTAAGATTGATAAATCCTCATCCACCGTCCCAATCATATCTTTAACATCAACCGCTAGTCCAGAATTAATACCAAGTCGATTACCACACTTAATCCAAGTGGCTAACGATGTTAGCCATCACCTTCAATGCATTGCAGCCATCGTAGAGCAATTCAAGTGGCGGAAGGTGACTGCAATCTTCGAACATAACCATGGATTTTCCTCTAATTCAGAGATATTAACTCACCTATCTTATTCTCTTAGGAGTGTTAATTCTGAGATTGATCGCCATGTCGCTTTCCCTTCGTTGAGTTCTCTTCTAGACCCAAGAGCCACCATAGAAGAGGAGTTCGCGAGGCTGAAGAACAAAACTAACAGGGTCTTCTTGGTTATACAGTCTTCGTTGGAATTTTCTATTTTGCTTTTCGACAAGGCAAAGCAAATGGGACTGATGGAAAAAGGCTCAGTGTGGATCATCGCTGATGATATAGCCAGCCATCTTGACTCTCTGGATTCTTCCGATACTTTCAACATGCAAGGTGTTGTGGGATGCAAAACCAACTTCATGGAAATAAGCGATACATTCAAACGGTTTAAATCCATATTCCGCAGAGAGTTTGGATTGGAATACCCTGAAGAGGAAAACCCACAGCCAAGTATCTTCGCTCTTCGAGCTTATGATGCGATATGGGCAATTGCTCACGCTGTAAACAAATCAGAAAGGAACTTTTCCTTCAAAGAATTATCAGAACATATTTTATCCACTAATCTCGAGGGCCTCAGTGGCAGGATAAGCTTCAGAGATCGTAAATTATTGGAAGTACCGATCTATAAGATAGTTAATGTTATTGGAAGAAGTTATAATGAATTAGCATACTGGTCACCGGTCTCTGGTTTCTCAGAGAAGCTCATCGAGCATCAAGTAATGGAGGCAACAACGAGTGGTTCTGCCAGAGTTTTAGGTGTAGTGTACTGGCCAGGAGGATTACAAACTGCACCAAAGGGTTGGGTTTACAGTAATGAAGAAAAGCCTTTGAAGATAGGTTTTCCTGCTAAGGATCCATGTCCTCAATTTGTGAACGTGAGCAACGATCAGAGACAGAACGAAACTCTCGTCACGGGTTTTTCAATCGAGGTCTTCAGAGCAGTTGTGAAGCGCTTGCCTTATGACTTGCCCTATGAATTGATTTCCTTTAATGGCACCTACGACGAATTAGTCGAGCAAGTCAACAAAAAGGTTCTTGATGCTGCAATCGGAGATATACAAATAATAGATAACCGATATGCTAAAGCCGAGTTTAGCCATCCATACCTTGAATCTGGCATTTCGATGGTAGTAAGAATAAAGCCAGATAGATCCAAAGAAACATGGATGTTCATGGATGCCTTCACAAAAGAAATGTGGCTACTAATGGCAATAATGCACCTCTTCATAGCATTTGTCATCTGGTTCATTGAAGAAGACAATCCCGAGCTTAGAGGATTCAGGGCTATGCTCTGGTTTTCTGTCACCCTATTGTTCTTTGTGCATAGAGAACCCGTGAGAGGTAACTTGGCCAGAGCAGTGCTGGCACCTTGGTTATTTACAATTCTCGTAGTGTCGGCTAGTTTTACAGCGAGCCTGTCATCGATGATGACAGTGTCTCAACTTGAACCTTCAATCCCAGATATACAAACCCTGCTAAAGACAAATGCAGTGGTGGGGTGCAACAAGCAAACTTTTCTGGTCAATTATTTGATTAGTGAACTGAAATTCAAGCCCGAGAACATCAGGGGATTCGACTCCATCACCGATTTCCCAAGAGCCTTTGAGAACAAAGAAATTAGAGCAGCTTTCACTATTGCCCCTCATGCTCAGGTCTTCCTCGCTACCCATTGCAAGGGTTACATCAAAGCAGGACCGACCTTGAAGCTTGGTGGATTAGGCTTTGCATTCCCAAAAGGTTCGCCTCTGGCATATGACGTATCACGGGCAGTGTTTAAAGCAATAGAAAGTGGAGAAGTGCAACATTTAGAATCGGAAATGCTATCCAAGACGGATTGTGGGTTGTTAAACGGTAAGATAGAAAATGAACAATTAGGTCCTCGTCCTTTCTTTGGCCTATTTTACATATCTGGAGGCATTGCCAGCATTGCTTTGTTAGTCAACCTTACTAGTTCTGTGGGAAAGAACGTCCAAAACATTAGGAACTGGATACAGAAGCACACGAGAAGAAATACCCCGGCCCCAGAAACAAATGATACATGGCACACACTGGCTAACAATGACCAAAGTACAGTTAATATTGAGTTACCACAAAGAACTAATAATCATGATACTGAAGCTGCATTGTAG 2637 0.4262 MSLFLFWLVLPFLTWSNSKAYETEGNCSHLPPKILNMGAVIDFSSRVGKEQKTAMEMAIQDVNSLTCLKLLVNFNDSHRNTAGNVQFLYSKQVQLVIEAKRNGAHQVAKIDKSSSTVPIISLTSTASPELIPSRLPHLIQVANDVSHHLQCIAAIVEQFKWRKVTAIFEHNHGFSSNSEILTHLSYSLRSVNSEIDRHVAFPSLSSLLDPRATIEEEFARLKNKTNRVFLVIQSSLEFSILLFDKAKQMGLMEKGSVWIIADDIASHLDSLDSSDTFNMQGVVGCKTNFMEISDTFKRFKSIFRREFGLEYPEEENPQPSIFALRAYDAIWAIAHAVNKSERNFSFKELSEHILSTNLEGLSGRISFRDRKLLEVPIYKIVNVIGRSYNELAYWSPVSGFSEKLIEHQVMEATTSGSARVLGVVYWPGGLQTAPKGWVYSNEEKPLKIGFPAKDPCPQFVNVSNDQRQNETLVTGFSIEVFRAVVKRLPYDLPYELISFNGTYDELVEQVNKKVLDAAIGDIQIIDNRYAKAEFSHPYLESGISMVVRIKPDRSKETWMFMDAFTKEMWLLMAIMHLFIAFVIWFIEEDNPELRGFRAMLWFSVTLLFFVHREPVRGNLARAVLAPWLFTILVVSASFTASLSSMMTVSQLEPSIPDIQTLLKTNAVVGCNKQTFLVNYLISELKFKPENIRGFDSITDFPRAFENKEIRAAFTIAPHAQVFLATHCKGYIKAGPTLKLGGLGFAFPKGSPLAYDVSRAVFKAIESGEVQHLESEMLSKTDCGLLNGKIENEQLGPRPFFGLFYISGGIASIALLVNLTSSVGKNVQNIRNWIQKHTRRNTPAPETNDTWHTLANNDQSTVNIELPQRTNNHDTEAAL 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1613 878 Pfam Ligand-gated ion channel 774 807 IPR001320 GO:0015276|GO:0016020
Dere05g1613 878 SUPERFAMILY Periplasmic binding protein-like II 420 773 - -
Dere05g1613 878 SMART GluR_14 447 779 IPR001320 GO:0015276|GO:0016020
Dere05g1613 878 Pfam Receptor family ligand binding region 52 384 IPR001828 -
Dere05g1613 878 SUPERFAMILY Periplasmic binding protein-like I 32 437 IPR028082 -
Dere05g1613 878 CDD PBP1_GABAb_receptor_plant 36 404 IPR044440 -
Dere05g1613 878 FunFam Glutamate receptor 148 317 - -
Dere05g1613 878 CDD GluR_Plant 444 777 - -
Dere05g1613 878 Gene3D - 441 557 - -
Dere05g1613 878 Gene3D - 558 686 - -
Dere05g1613 878 Gene3D - 46 376 - -
Dere05g1613 878 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 837 IPR015683 -
Dere05g1613 878 Pfam Bacterial extracellular solute-binding proteins, family 3 472 773 IPR001638 -
Dere05g1613 878 FunFam Glutamate receptor 557 689 - -
Dere05g1613 878 Gene3D - 144 396 - -
Dere05g1613 878 FunFam Glutamate receptor 441 556 - -
Dere05g1613 878 PIRSF IGluLR_plant 1 877 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1613 Dere-ChrDere05 25849162 25853890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1613 32 816 Ion Channels AT3G51480 30.916 2.93e-115 371