Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1581 ATGGTGGTACCTAAACTCTCGTACGAGGAGAGTCGCCGCAAAAGATTGGAGGAGAACAAGAAGAGAATAGAAGCCCTTAATCTGCCCCAGCTTTCTCAAGCCCTCCGAAATTCCTCCTCTCCCAAACCCTCTCCTATGAAGCACACGAAATCTCGCTCTGTCCAGAAGCAGATTGTTGTTGTAAGGAGGTCTGGCCGTGTCGCAAACATGCCCGCTCCCGTTTACAAAGAAGTGCTTGTTGATCGCGTGGCAATACCTAGAAGAGTTTATGGTACAAAAAGAAATCTATCAAACCGCGTATATGCTTCAGAGGAAGCCAGGGAAGAAGCTTTTGAGAAAGCAGATAAGTTACTGTCGGATTTAGATTCCGAGTTTCCTACATTTATAAAGTCAATGCTTCAGTCACACGTAAGCGGGGGATTTTGGCTGGGCCTTCCAGTCCGGTTCTGCAGGACTAACCTTCCAACGCGGGATGGAATGATTACTTTGATAGATGAAGATGGAGAGGAGTATCCCACAGTATATTTGGCCCGTAAGACTGGACTCAGCGGTGGATGGAAGGGCTTTGCGGTTGCTCATAACTTAGCTGATGGTGACGCATTAGTTTTTCAGTTAATCAGACCTACAGCATTCAAGGTGTACATTATTAGAGTGAGAAGTCCTACTCCTGCAGAGGGCAATTAG 684 0.4664 MVVPKLSYEESRRKRLEENKKRIEALNLPQLSQALRNSSSPKPSPMKHTKSRSVQKQIVVVRRSGRVANMPAPVYKEVLVDRVAIPRRVYGTKRNLSNRVYASEEAREEAFEKADKLLSDLDSEFPTFIKSMLQSHVSGGFWLGLPVRFCRTNLPTRDGMITLIDEDGEEYPTVYLARKTGLSGGWKGFAVAHNLADGDALVFQLIRPTAFKVYIIRVRSPTPAEGN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1581 227 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 40 219 IPR044837 -
Dere05g1581 227 SMART B3_2 128 219 IPR003340 GO:0003677
Dere05g1581 227 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Dere05g1581 227 SUPERFAMILY DNA-binding pseudobarrel domain 121 217 IPR015300 -
Dere05g1581 227 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Dere05g1581 227 Coils Coil 6 26 - -
Dere05g1581 227 Gene3D - 102 220 IPR015300 -
Dere05g1581 227 MobiDBLite consensus disorder prediction 30 55 - -
Dere05g1581 227 CDD B3_DNA 126 217 IPR003340 GO:0003677
Dere05g1581 227 MobiDBLite consensus disorder prediction 27 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1581 Dere-ChrDere05 25426721 25428342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1581 55 220 B3 DNA Binding Superfamily AT5G42700 63.855 2.61e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere05g1581 B3 8.8e-16 CL0405