Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1569 ATGTCAAGCAATGCAATAACTCTCTTTATCTTGTTTCTCAATATCTCCTTGTTTCCATCCATCTCTGCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTTTCAACCTTCAATTCCTCTGATTCTGCTACCTCCTTCTCTTCTTGGAATCCAACCCACAAAAGTCCCTGCAGATGGGATTACATAAAATGTTCCAAAGATGGGTTTGTTTCAGAGATCATAATAACATCTATTAATCTTCGTAGCAGCTTCCCTACACAGCTCCTTTCTTTTGGACACCTCACCAATCTTGTCATCTCAAATGGAAATCTTACTGGTGAGATTCCAAGTTCGTTAGGAAACTTGTCATCACTGGTTTCTTTGGACCTCAGTTTCAATGCTTTATCAGGAACCATTCCTGCAGAGATAGGAAAGTTACCTAATCTGCAGTGGTTATCATTGAATTCAAATTCCTTGCATGGAGCAATTCCAACAGAAATTGGGAACTGTTCAAAGCTTCGGCAGCTGGAACTTTATGATAACCAGCTCTCTGGTAAGATTCCTGTAGAAATAGGCCATTTGAAGAATCTTGAAACGTTTCGAGCAGGTGGAAATCAGGGAATGCATGGTGAAATTCCAAAGCAGATTTCAAACTGCAAAGCTCTCACTTTTCTGGGTCTTGCAGATACTGGGATCTCAGGGGAAATTCCATCAAGTATAGGAGAACTTAAGAATATCAAGACACTATCTATCTACACGGCAAACCTTACAGGTCACATCCCACCAGAGATTCATAATTGTTCAGCCTTGGAGAATTTGTTTCTGTACGAAAATCAGCTTTCTGGTGACATTCCTTATGAATTGGGTTCCATGAAAAGCCTCAGGAGAGTATTGTTATGGCAGAACAATTTAACTGGCATCATTCCAGAGAGTCTAGGAAACTGTACGAGTCTGATGGTTATAGATTTCTCTTTGAATTCATTGGAAGGTGAGCTCCCTATGACTCTTAGAAATTTACTCTCACTGGAGGAGCTTCTTCTCTCTGATAACAACATTTCTGGAGAAATACCGTCCTATATTGGCAACTTTTCCAGACTGAAGCAACTTGAATTAGATAACAACAGATTATCTGGCGAGATTCCACCTGTTATGGGACAACTTAAACAACTCACCTTGTTCTTTGCCTGGCAGAACCAGCTCCATGGAAGCATACCAACAGAACTATCCAACTGTGAGAAACTTGAAGCAGTTGATCTTTCCCACAATTTCCTCACCGGGTCAATTCCAAGTTCTCTTTTTCGTCTTGAGAACTTAACTCAATTACTGTTGATATCAAATCGACTTTCAGGTCAAATTCCACCAGATATTGGCAGCTGCACTAGCTTGATCAGGCTACGGCTAGGATCAAACAACTTCACTGGTCCAATTCCACCAGAAATAGGTTTGCTAAGCAGTTTAAGCTTTCTTGAATTGTCACATAATCTACTTACTGGACAAATTCCTGACCAAATTGGCAACTGCAATCAGCTAGAAATGCTTGACTTGCATAGGAATCAGCTGCAAGGAACAATTCCTTCCTCGTTGGAGTTCCTAGTTGTTCTTAATGTGTTAGATCTTTCTACAAACAGAATAACAGGCAGCATTCCCCAAAATTTGGGTAAGCTTACATCTTTAAACAAGCTTATGATCAGTGGCAACAGTATTACAGGTTTGATCCCTAAGTCACTGGGCCTTTGTAAGAATTTGCAGTTGCTGGATATTAGCAACAATAGAATCGCTGGTTCAATTCCGGATGAGATTGGTCAATTGCAAGGACTCGATATCCTCTTGAACTTGAGTTGGAATTCTCTAACAGGCCCCATTCCAGAGAGCTTCTCAAATCTCTCAAAACTTTCCAACTTGGACCTCTCCCACAACAAGCTAACAGGTAGCCTCCGAATACTGGGTGGTCTTGACAATTTAGTGTCTCTGAATGTCTCCTACAATAGTTTTTCCGGTTCTCTTCCTGAAACGAAGTTCTTTCACGATCTCCCGGCTGCTGCATTTGCTGGTAACCCTGAGCTCTGCATTAGCAAGTGTGAAATGAATAGAAATCGCCAAGGCATCAAGTCAATAAGAAATGTTATAATCTACACTTTTCTTGGTGTTATTTTAACAGCTATGTTTGTGACTTTTGGAGTAATTTTTGCTCTGAGAATCCAAGGGAGCACATTTGGGAGGAAATTTGATGAAGAAGCTGAAATGGAATGGGCTTTCACTCCATTTCAAAAACTTAACTTCTCCATCAATGACATTTTCACAAAGTTATCAGATTCAAACATTGTAGGAAAGGGATGCTCAGGGGTTGTTTATCGTGTTGAGACTCCAATGAAACAGATCATTGCAGTGAAGAAGCTATGGCCAATAAAGAATGACGAGCCACCAGAGAGAGATCTGTTTTCTGCAGAAGTTCAGACCCTGGGATCAATACGACATAAAAATATAGTCAGGCTTCTCGGATGCTGTAATAATGGAAGAACAAGGTTGCTACTGTTTGATTATATCAGTAATGGGAGTTTGTGCGGGTTGCTCCACGAAAAGAGGTTGTTCTTGGATTGGGATGCAAGGTACAAGATCGTACTGGGTGCTGCTCAAGGTTTAGAATATCTGCATCATGATTGTATCCCTCCAATCGTCCATCGGGACATTAAGGCTAACAACATCTTGGTGGGACCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTCGTGAATTCCTCGGAGTGTTCAAAAGCCTCTGCTATAGTTGCAGGCTCTTACGGTTACATAGCTCCTGAATATGGTTACAGTTTAAGGATCACAGAGAAGAGTGATGTATACAGTTATGGTGTGGTGCTGCTGGAGGTATTAACAGGGATGGAGCCAACTGATGATAGGATTCCAGAGGGTGCCCATATAGTCACTTGGGTTAACAGGGAAATCAGAGAGAAGAAAAGGGAATTCGCATCAATTCTTGACCAGCAACTAGTATTGCAATGTGGTACTCGAACTCCAGAGATGCTTCAAGTGCTAGGGGTGGCTCTGCTATGTGTAAATCCATCCCCAGAAGAACGACCCACTATGAAAGATGTAACAGCAATGCTCAAGGAGATCAAACATGAAACTGACAATTTCGAGAAACCAAGTTTTCTCCACAAAGGGGCAGTCACCAATCCAAAAGTAGCAGTTCACTGTTCAAGTTTCTCCAGATCAAGTGAACCATTAATAGAATCGTCGTCATCATCTTCTTCTTCCTAA 3267 0.4129 MSSNAITLFILFLNISLFPSISALNQEGLSLLSWLSTFNSSDSATSFSSWNPTHKSPCRWDYIKCSKDGFVSEIIITSINLRSSFPTQLLSFGHLTNLVISNGNLTGEIPSSLGNLSSLVSLDLSFNALSGTIPAEIGKLPNLQWLSLNSNSLHGAIPTEIGNCSKLRQLELYDNQLSGKIPVEIGHLKNLETFRAGGNQGMHGEIPKQISNCKALTFLGLADTGISGEIPSSIGELKNIKTLSIYTANLTGHIPPEIHNCSALENLFLYENQLSGDIPYELGSMKSLRRVLLWQNNLTGIIPESLGNCTSLMVIDFSLNSLEGELPMTLRNLLSLEELLLSDNNISGEIPSYIGNFSRLKQLELDNNRLSGEIPPVMGQLKQLTLFFAWQNQLHGSIPTELSNCEKLEAVDLSHNFLTGSIPSSLFRLENLTQLLLISNRLSGQIPPDIGSCTSLIRLRLGSNNFTGPIPPEIGLLSSLSFLELSHNLLTGQIPDQIGNCNQLEMLDLHRNQLQGTIPSSLEFLVVLNVLDLSTNRITGSIPQNLGKLTSLNKLMISGNSITGLIPKSLGLCKNLQLLDISNNRIAGSIPDEIGQLQGLDILLNLSWNSLTGPIPESFSNLSKLSNLDLSHNKLTGSLRILGGLDNLVSLNVSYNSFSGSLPETKFFHDLPAAAFAGNPELCISKCEMNRNRQGIKSIRNVIIYTFLGVILTAMFVTFGVIFALRIQGSTFGRKFDEEAEMEWAFTPFQKLNFSINDIFTKLSDSNIVGKGCSGVVYRVETPMKQIIAVKKLWPIKNDEPPERDLFSAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYISNGSLCGLLHEKRLFLDWDARYKIVLGAAQGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVNSSECSKASAIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDDRIPEGAHIVTWVNREIREKKREFASILDQQLVLQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIKHETDNFEKPSFLHKGAVTNPKVAVHCSSFSRSSEPLIESSSSSSSS 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1569 1088 ProSiteProfiles Protein kinase domain profile. 763 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1569 1088 SUPERFAMILY Protein kinase-like (PK-like) 749 1047 IPR011009 -
Dere05g1569 1088 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 514 1038 - -
Dere05g1569 1088 Gene3D Ribonuclease Inhibitor 139 214 IPR032675 -
Dere05g1569 1088 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Dere05g1569 1088 SUPERFAMILY RNI-like 293 658 - -
Dere05g1569 1088 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Dere05g1569 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Dere05g1569 1088 PRINTS Leucine-rich repeat signature 119 132 - -
Dere05g1569 1088 PRINTS Leucine-rich repeat signature 622 635 - -
Dere05g1569 1088 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Dere05g1569 1088 Gene3D Ribonuclease Inhibitor 29 138 IPR032675 -
Dere05g1569 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Dere05g1569 1088 SUPERFAMILY L domain-like 40 395 - -
Dere05g1569 1088 SMART serkin_6 763 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1569 1088 Gene3D Ribonuclease Inhibitor 603 691 IPR032675 -
Dere05g1569 1088 Gene3D Ribonuclease Inhibitor 523 602 IPR032675 -
Dere05g1569 1088 Gene3D Ribonuclease Inhibitor 325 421 IPR032675 -
Dere05g1569 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Dere05g1569 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Dere05g1569 1088 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Dere05g1569 1088 Gene3D Ribonuclease Inhibitor 221 324 IPR032675 -
Dere05g1569 1088 Gene3D Ribonuclease Inhibitor 422 522 IPR032675 -
Dere05g1569 1088 SMART LRR_typ_2 429 453 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 525 548 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 477 501 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 116 139 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 140 164 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 549 572 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 573 597 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 285 308 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 357 381 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 645 678 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 622 644 IPR003591 -
Dere05g1569 1088 SMART LRR_typ_2 333 356 IPR003591 -
Dere05g1569 1088 SMART LRR_sd22_2 477 503 - -
Dere05g1569 1088 SMART LRR_sd22_2 116 131 - -
Dere05g1569 1088 SMART LRR_sd22_2 164 193 - -
Dere05g1569 1088 SMART LRR_sd22_2 622 647 - -
Dere05g1569 1088 SMART LRR_sd22_2 333 359 - -
Dere05g1569 1088 SMART LRR_sd22_2 525 548 - -
Dere05g1569 1088 SMART LRR_sd22_2 573 602 - -
Dere05g1569 1088 SMART LRR_sd22_2 381 407 - -
Dere05g1569 1088 Gene3D Transferase(Phosphotransferase) domain 1 842 1057 - -
Dere05g1569 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Dere05g1569 1088 Pfam Leucine rich repeat 604 657 IPR001611 GO:0005515
Dere05g1569 1088 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Dere05g1569 1088 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Dere05g1569 1088 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Dere05g1569 1088 Gene3D Phosphorylase Kinase; domain 1 729 841 - -
Dere05g1569 1088 Pfam Protein kinase domain 766 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1569 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1569 Dere-ChrDere05 25330105 25333514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1569 23 1076 Receptor kinase-like Gene Family AT5G56040 47.378 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere05g1569 Pkinase 3.4e-41 CL0016