LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g1563	ATGGGCAAGAAAATGGACCTCTTGTTTATATTCTCAGTAGCCCTCATCATTGGAGCAATTTTCGTTAGTGTTGCTGCTGAGCCAGTGGAAGATAAACAAGCTTTGCTTGATTTCCTTCGCAATATGGGTCGCTCTCATCCTCTGAACTGGAATGAGAGTTCTTCTGCATGCAAAAGCTGGAGAGGAGTACTCTGCAACAATGAACAATCTAGAGTCATTGCCCTCCGATTACCTGGAGCTGGATTGAGTGGTCCAATCCCATCCAATACTCTTAGTCGCCTCTCAGCACTCCAGACTTTGAGTCTTAGATCCAATAGTATAACGGGTCCTTTTCCTTCTGATTTCTCTGAGCTTAAAAATTTGACATATGTTTTTCTCCAATTCAACAAGTTTTCCGGTCCATTGCCATCGGATTTTTCCGTTTGGAGTAATCTTATTATTGTCAATTTATCCAATAATTCTTTTAATGGAACCATCCCTTCTTCCATTTCAAAATTGACTCATCTCACGTCTTTAGTTCTAGCCAACAACTCGCTTTCTGGGCAAATTCCTGATCTTGATATTCCTAGCCTGCAAGAGCTAGATTTAGCTAACAATAACCTTAGTGGGGTTGTGCCAAAATCCCTTGAAAGATTTCCAGGTTCAGCTTTTGTTGGTAACAATAACCTTACATCAGAAAATGCACTTCCTCCGGCTTTTCCACTCCAACCACCAAGTGCTCATCCAACAAAGAAAACCACACTCAGTGAGCCTGCATTACTGGCTATCATCCTTGGTGGTTGTGTGCTATTATTTCTGTTGATCGCAGCTTTCATGCTTGTCCGCCACTATGAGAAAGGTGATGAAGAAGCGCTACCAGTGAAGTCCAAGAAAAAGGAAGCCTCTCTGAAAAAAGAAGTATCTGAAACTGAAAGTCAAGACAAGAACAAAATTGTATTCTTTGAGGGTCGCAATCTTGCCTTTGACCTGGAGGACCTGTTGAGATCATCTGCTGAGGTGCTAGGAAAGGGAACCTTTGGAACAACATATAAGGCTGCTCTAGATGACATAACCACAGTGGTGGTGAAGAGATTAAAGGAAGTCACAGTGGGAAAACGCGAGTTTGAACAGCAAATGGAGGCGGTGGGAAGGATTAGGCAGGACAATGTGGCTCCACTAAGGGCATATTATTATTCCAAGGAAGAGAAACTTACGGTGTATGATCACTACGAACAGGGTAGTGCTTCTGCAATGTTGCATGGTCGAAGAGGGGAAGGCAGGGCTTCTTTAGACTGGGATAGCCGACTGAGAATTGCAATAGGTGCAGCAAGAGGGATAGCACACATCCACGCACAACAAGGAGGGAAACTAGTGCATGGAAACGTAAAAGCCTCAAACATCTTCCTAAACTCCCAAGGGTATGGTTGTGTATCTGATGCAGGTTTGGCAACATTAGTAAGTTCAATACCCTCGCCAGCACAGAGAACTGGAGGGTACCGTGCCCCAGAAGTAACAGACATAAGAAAAGCAAGTCATGCTTCTGATGTGTACAGTTTCGGGGTGCTGGTGCTTGAGCTTTTGACTGGGAAATCACCCATACATGCCACGGGAAGTGAGGAGGTTGTGCACCTGGTGAGGTGGGTGAATTCTGTGGTCAGAGAGGAGTGGACTGCAGAGGTGTTTGATGTTGAGTTACTGAGATATCCAAATATAGAGGAGGAAATGGTAGAGATGTTGCAGATAGGGATGGCATGTGTGGTGAGGGTGCCAGAGCGGAGACCAAAAATGCAACATGTTGTAAGAATGATGGAAGAGATTCGAAAAGTCGATACCGGAACTCAACCATCCACAGAAGTTTCTACCCCAACACCACATGCAACTGATGCACCTTCTTCCACTGTTGCACAATGA	1890	0.445	MGKKMDLLFIFSVALIIGAIFVSVAAEPVEDKQALLDFLRNMGRSHPLNWNESSSACKSWRGVLCNNEQSRVIALRLPGAGLSGPIPSNTLSRLSALQTLSLRSNSITGPFPSDFSELKNLTYVFLQFNKFSGPLPSDFSVWSNLIIVNLSNNSFNGTIPSSISKLTHLTSLVLANNSLSGQIPDLDIPSLQELDLANNNLSGVVPKSLERFPGSAFVGNNNLTSENALPPAFPLQPPSAHPTKKTTLSEPALLAIILGGCVLLFLLIAAFMLVRHYEKGDEEALPVKSKKKEASLKKEVSETESQDKNKIVFFEGRNLAFDLEDLLRSSAEVLGKGTFGTTYKAALDDITTVVVKRLKEVTVGKREFEQQMEAVGRIRQDNVAPLRAYYYSKEEKLTVYDHYEQGSASAMLHGRRGEGRASLDWDSRLRIAIGAARGIAHIHAQQGGKLVHGNVKASNIFLNSQGYGCVSDAGLATLVSSIPSPAQRTGGYRAPEVTDIRKASHASDVYSFGVLVLELLTGKSPIHATGSEEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACVVRVPERRPKMQHVVRMMEEIRKVDTGTQPSTEVSTPTPHATDAPSSTVAQ	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g1563	629	Pfam	Protein tyrosine and serine/threonine kinase	332	595	IPR001245	GO:0004672\|GO:0006468
	Dere05g1563	629	FunFam	Probable inactive receptor kinase RLK902	28	187	-	-
	Dere05g1563	629	Pfam	Leucine rich repeat N-terminal domain	30	66	IPR013210	-
	Dere05g1563	629	ProSiteProfiles	Protein kinase domain profile.	328	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g1563	629	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	403	610	-	-
	Dere05g1563	629	Pfam	Leucine Rich Repeat	190	211	IPR001611	GO:0005515
	Dere05g1563	629	Gene3D	Phosphorylase Kinase; domain 1	292	402	-	-
	Dere05g1563	629	Gene3D	Transferase(Phosphotransferase) domain 1	404	614	-	-
	Dere05g1563	629	SUPERFAMILY	L domain-like	44	212	-	-
	Dere05g1563	629	FunFam	pollen receptor-like kinase 1	297	402	-	-
	Dere05g1563	629	PANTHER	OS05G0588300 PROTEIN	13	608	-	-
	Dere05g1563	629	MobiDBLite	consensus disorder prediction	603	629	-	-
	Dere05g1563	629	Gene3D	Ribonuclease Inhibitor	29	237	IPR032675	-
	Dere05g1563	629	ProSitePatterns	Protein kinases ATP-binding region signature.	334	365	IPR017441	GO:0005524
	Dere05g1563	629	SUPERFAMILY	Protein kinase-like (PK-like)	331	597	IPR011009	-
	Dere05g1563	629	MobiDBLite	consensus disorder prediction	599	629	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g1563	Dere-ChrDere05	25250521	25252499	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g1563	20	626	Receptor kinase-like Gene Family	AT4G23740	55.431	0.0	669

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Dere05g1563		PK_Tyr_Ser-Thr	3.8e-28	CL0016