Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1558 ATGGAACAGAGCATCCTATGCAAATACACTGTGCATCACAGTGTTACCAACAAGCACACGAAGCCGGCAACGGTAAAGAAGGCCTCCGACGTCTACAGTCCCGTAGAGCCGCGAGTGGTACGGATTTCTGTGACCGATCCAGATGCCACTGACTCCTCCAGCGACGAGGAAGGAGAGTACTGTTTTGGCCGTCAGAGGGTCAAGCGTTATGTGAATCAGATTAACATCGAAGCAAGCTGCAAGAACGTGGTCGCTTCCAATCCCCGAAAGAGGCTCGCCGGAGAAACCTCAAATTGCCGGCGGCCGGTCAAGGTTTCTTCTACAAATAACGGCAGGAAGTTCCGGGGAGTACGACAAAGACCTTGGGGGAAATGGGCGGCCGAGATTCGAGATCCCGCGCGACGCGTACGCGTGTGGTTGGGCACCTTTGACACTGCGGAGGAGGCGGCTATGGTTTATGATAATGCAGCGATTAAGATACGAGGACCCGACGCTCAAACAAACTTTGTGACCCCACCGCCGAGGGAAACGGTCGAGGAAGCACAAGTGGGAGTGAAGCCGGAAATGAATGTGGTGGTGAAGTCAGAAGCGTCTGGGTCCGGTTACGATTCCGGCGAGGAGTCGCATCGTCTGTCATCTCCCACATCAGTGCTGCAGTTCAGAAGCAATTGCAGCGAAGAGACCGAACCGCGAAAGGCAAATGAACCGGAGAAAGAGAGTGAAGCAGAGGCAGAGGCAGAGGCAGAGGCAGTGGCAGCGGCAGCGGAAGTGGAAGTGGTGTTCCGGGAGTGTGAAGGTGAAACGAGGCTGCCAGTGGAAAAGGAAGACTATTTCGGGTTCGACATGCCAAATTGGGACGAAGTGTTCAATTTCTCAACCCCAGAACCGGAATACTCGTTGCTGTTCGAAGAACCTTCCCAGTTCATGGGGGAAACGACGCAGATCTTAGCAGACGAAGATTTCAGCGTCGACAATATGATAGTACAGGATTCAGAGTTAGACGTGGAGAAATCGTACTCGCCATCGACGTTGTGCCAAATGGACGATTACTTTCAAGACATTTTGTTAGGGTCAGACCCTCTGGTGGTGCTCTGA 1095 0.5315 MEQSILCKYTVHHSVTNKHTKPATVKKASDVYSPVEPRVVRISVTDPDATDSSSDEEGEYCFGRQRVKRYVNQINIEASCKNVVASNPRKRLAGETSNCRRPVKVSSTNNGRKFRGVRQRPWGKWAAEIRDPARRVRVWLGTFDTAEEAAMVYDNAAIKIRGPDAQTNFVTPPPRETVEEAQVGVKPEMNVVVKSEASGSGYDSGEESHRLSSPTSVLQFRSNCSEETEPRKANEPEKESEAEAEAEAEAVAAAAEVEVVFRECEGETRLPVEKEDYFGFDMPNWDEVFNFSTPEPEYSLLFEEPSQFMGETTQILADEDFSVDNMIVQDSELDVEKSYSPSTLCQMDDYFQDILLGSDPLVVL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1558 364 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Dere05g1558 364 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Dere05g1558 364 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Dere05g1558 364 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Dere05g1558 364 MobiDBLite consensus disorder prediction 95 115 - -
Dere05g1558 364 MobiDBLite consensus disorder prediction 197 247 - -
Dere05g1558 364 MobiDBLite consensus disorder prediction 201 224 - -
Dere05g1558 364 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Dere05g1558 364 MobiDBLite consensus disorder prediction 225 239 - -
Dere05g1558 364 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 270 - -
Dere05g1558 364 CDD AP2 113 169 IPR001471 GO:0003700|GO:0006355
Dere05g1558 364 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Dere05g1558 364 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Dere05g1558 364 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Dere05g1558 364 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1558 Dere-ChrDere05 25206634 25207728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1558 7 363 AP2-EREBP Transcription Factor Family AT4G27950 40.659 1.22e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere05g1558 AP2 4.3e-14 CL0081