Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1555 ATGGAGGACGGCTTAATCTCTGATATTTTTGAAGACAAAGACTTGGACTTTGGCAGAGACGATCTGCTTGCCATTTTGGACACCCTTCAGGACTTCACCCATTTTCCTCCCACCGATGAAGCCCTTATTGTCAGCTCTAAAGACAACGAGGAAACTTGTTCGAGGTTAGTGTCCCAGAAATCAACTTCTTCAAGCGCTCTTCAAGCTGATGTTTCTCAGACTCAGCTTCCGACTTCACCGAAAGCCAAGAGACAGAAGCTCGCGGAGTTGTCAGAGGAACCAAAGATATCTCATATCACTGTGGAGCGCAACCGTAGAAAGCAAATGAACGAGCACTTGTCGGTCTTGAGGTCTCTCATGCCTTGCTTTTACGTCAAACGAGGAGATCAAGCGTCAATAATAGGAGGGGTTGTGGACTACATCAACGAGTTGCAGCAGCTACTACAATCCCTGGAAGCGAAGAAACAGAGAAAAGTGTACAGCGATGTTCTGAGCCCTAGGCTTGTGCCAAGCCCGAGGCTTTCTCCTAGAATGCCACCGGTGAGTCCTAGGCTAAACCTACCCATTAGCCCAAGGACCCCCCAACCAGGTAGCCCCTACAAAGCCCCACATAGACTGTCCAACTCTCTCGAACCATCTCCCACATCTTCTGCTTCTTCTTCGATCAACGACAACATCAACGAGCTCGTCGCCAATTCCAGGACCCCCATCGCCGACGTGGAGGTCAAGTTCTCCGGCCCCCACGTCCTCTTGAAAACTCTATCTCCTCCAATCCCTGGCCAAGCTCTGAAAATCATATCCGCTCTCGAAGATCTGGCCCTTGAAATCCTTCACGTCAGCATCACCACTGCTGATGAAAGCATGCTTAACTCATTCACCATTAAGATCGGGATTGAATGCCAACTCAGTGCCGAGGATCTGGCTCAACAAGTCCAGCAAACATTCTGCCAAGTCTATTAA 960 0.4938 MEDGLISDIFEDKDLDFGRDDLLAILDTLQDFTHFPPTDEALIVSSKDNEETCSRLVSQKSTSSSALQADVSQTQLPTSPKAKRQKLAELSEEPKISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQSLEAKKQRKVYSDVLSPRLVPSPRLSPRMPPVSPRLNLPISPRTPQPGSPYKAPHRLSNSLEPSPTSSASSSINDNINELVANSRTPIADVEVKFSGPHVLLKTLSPPIPGQALKIISALEDLALEILHVSITTADESMLNSFTIKIGIECQLSAEDLAQQVQQTFCQVY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1555 319 Coils Coil 137 157 - -
Dere05g1555 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 144 IPR011598 GO:0046983
Dere05g1555 319 Pfam Helix-loop-helix DNA-binding domain 95 145 IPR011598 GO:0046983
Dere05g1555 319 Gene3D - 82 158 IPR036638 GO:0046983
Dere05g1555 319 SMART finulus 99 150 IPR011598 GO:0046983
Dere05g1555 319 FunFam Transcription factor SPEECHLESS 85 159 - -
Dere05g1555 319 CDD bHLH_AtFAMA_like 96 167 - -
Dere05g1555 319 PANTHER TRANSCRIPTION FACTOR FAMA 6 315 IPR044283 GO:0003700|GO:0010052
Dere05g1555 319 MobiDBLite consensus disorder prediction 64 88 - -
Dere05g1555 319 MobiDBLite consensus disorder prediction 208 222 - -
Dere05g1555 319 MobiDBLite consensus disorder prediction 64 81 - -
Dere05g1555 319 MobiDBLite consensus disorder prediction 172 198 - -
Dere05g1555 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 161 IPR036638 GO:0046983
Dere05g1555 319 MobiDBLite consensus disorder prediction 168 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1555 Dere-ChrDere05 25147637 25149408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1555 5 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 46.779 1.36e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere05g1555 HLH 4.9e-10 No_clan