Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1554 ATGACCCATGCACCCTTTGACGTGGTTCTAGTTCTAGAACTTCTATTGTCTCCGTTCTTAAAGCATCTTGAGGCCAAGTGTTTGGTCACGAAACTCAATATCAGATTCACTCTTTCCCATGCTCTGCCCAAACAGAAAGCCCGACTTTGTCTTTTCTTCGTTTTAAACCATTTTCTATCCTTGCCTCTACACAAATCTCAAAACCCTATTCATATATTGGCCAATCACAGATGTTGTAGACATCTTTTAGCTTTGTTTTTGTGCGTCCCCTGTTTTGTCCTTCTCTGGCATGAGCGCCCAAAAGTTCTGAGTTCTGACATTAAAATCGTTCCATTGGAGCTTAAATCAATAATTTGGTATCAGTCTATCGCTGCACAAGTCGATCAGCTGTGTCTAACTTTGGTGGCTGGCTACATGGACAAGGACAACATGGGAGGGTTGGAAAAGAAGCTGATAAATGAGCTGGTACAAGGTAGGGAGCTGGCAAGGCAACTCCAGATGTGTCTCCGCGCGCCTTCTTTGTCCCAAGAAACCCGTGAGTTCTTGATCCAGAGAATCATAGCCGCATTTGAAAAGGCACTTGCAATGGTAAACTGGAATGGTGGGTCGTCGGTGGGCGAGGCATCACAGCCCGCACCGCTTGGAATCCGAATGTCTGAGTCACCACCTTTGAGTGGAAGTCCTCGCAGTGAAGACTCTGACAGGGATATCCATGATCAAAGTGCCTCCAGAAAGAGAAAGAGCATGCCAAGGTGGACAAAACAGATTAAAGTTGGCCCCGGGACGGGAGTGGAAGGGCCTCTCGATGATGGATATAGTTGGAGAAAATATGGCCAGAAAGACATCCTGGGAGCCAAGTTTCCGAGAGGCTATTACAGATGCACCCATAGAAATGTTCAGGGATGCTTGGCCACAAAGCAAGTGCAAAGATCTGATGAAGACCCAACCATATTCGAAATCACTTACAGGGGAACCCACACCTGCAAACAGTCATCCACTGTGGCTCCTTCGTCCGGTCCTCATGGAGGCCAAGAACTAAATCCAAACACTGCAGATCCTCTGCAGCAATCACAAGAAGAACTACTTCTGAACCTTCGGGCTGGTCTGAGAGTCCAAACAGAGAATCTGAATGTCCCGGACCCAGAGACATCATTTGCTCCGTTCCTTTTTGCTTCAACCTCCTCCGGCATGAATGATGAAAACCCAGTGTTTACATGCCCTATGATGGAAAACAATTTTGCTGAAATCTTTAGTCGTGATCCTACCTATATGTCCCCTGCCACATCAGGAATATCTTACATTTCAGTGTCTCCAAGTGGGGTCAATAGCAGCTTGGGTGGGCTGCCAAATTTGGCAAGTTCTGGGTCTGACATCAACGACATAGTCTCAGCCGTCACTTCAGCTGCAAACTCTCCAACCGTTGGTTTAGAGCCTCCATTTGATCAGATCGGATTTGACGGCCCCAACTTCACCTTTGATAACCCACCATTCTTCTAG 1497 0.4696 MTHAPFDVVLVLELLLSPFLKHLEAKCLVTKLNIRFTLSHALPKQKARLCLFFVLNHFLSLPLHKSQNPIHILANHRCCRHLLALFLCVPCFVLLWHERPKVLSSDIKIVPLELKSIIWYQSIAAQVDQLCLTLVAGYMDKDNMGGLEKKLINELVQGRELARQLQMCLRAPSLSQETREFLIQRIIAAFEKALAMVNWNGGSSVGEASQPAPLGIRMSESPPLSGSPRSEDSDRDIHDQSASRKRKSMPRWTKQIKVGPGTGVEGPLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTIFEITYRGTHTCKQSSTVAPSSGPHGGQELNPNTADPLQQSQEELLLNLRAGLRVQTENLNVPDPETSFAPFLFASTSSGMNDENPVFTCPMMENNFAEIFSRDPTYMSPATSGISYISVSPSGVNSSLGGLPNLASSGSDINDIVSAVTSAANSPTVGLEPPFDQIGFDGPNFTFDNPPFF 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1554 498 ProSiteProfiles WRKY domain profile. 263 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1554 498 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 146 356 IPR044810 GO:0003700
Dere05g1554 498 MobiDBLite consensus disorder prediction 229 246 - -
Dere05g1554 498 MobiDBLite consensus disorder prediction 329 351 - -
Dere05g1554 498 SMART WRKY_cls 268 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1554 498 Pfam WRKY DNA -binding domain 269 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1554 498 Gene3D WRKY domain 262 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g1554 498 MobiDBLite consensus disorder prediction 208 267 - -
Dere05g1554 498 SUPERFAMILY WRKY DNA-binding domain 267 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g1554 498 FunFam WRKY transcription factor 53 254 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1554 Dere-ChrDere05 25140715 25144838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1554 139 335 WRKY Transcription Factor Family AT5G24110 46.269 1.05e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere05g1554 WRKY 2.7e-27 CL0274