Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1546 ATGAGCGCCTCGGAGGTCACCTTCACGCGCTCTCATGCTTTTAGCCTTTGCACTCTGGCACCCTCGTGTGCGTGTCTTTCTCCGGCTATGAAGGGGTTTTGTTTTTTTTTGTTGGGGTCAATGGTTGTGAGTGTTGAGCTTGCGACCGTACACGTGTCAAAATTCAGGCCCATGTTTGACTGGGCCGGCATGGCCCACATGACCGGACAACGTTACAGAGGTGTAGATTCGTTGATCTCGACCCCGCAACGACTTGTGTCTGCATCAGACGCACGGGAAGTAGCCACGTGCAGGAGCGTCCTTTTAACAGCCACGTGTACGGTTGTCTTGGGTTTCAACTTTCAAGAGCAGCTAGATATTGAAAGGCCTGTTTTTCTAATAGCATCTTTTGTTAATTCTGGAATCTGTGGGTATGATCAGTCCTGTCAGACACAAAAGGAAGATATAAGGATAAAGAACATGGAAGAGTCAACACCCTTTAGTTTTTTGCTTGTAATTGAGCAACCCCGGGAAGATTATGTAGGACAGATTCAGATCCTTCGATGGTTAGATTTCAGGAAATCAGTATTGGAAGGAGCTGTAAAGAATTTGTGCTGGAGAATTAAAGTCAATATGAAATACATGTTTCTTCTCATTGTCACTTTTAAGATTATTAAGAAGAAGCTGAGCAAGCTACAAGAAGCAATGGGATTCCAAACCCCTCGTGCTAGTAAACCGAAGGTGCAACCTCTTACCAAATCCATTCCCTCAACCTATGATTCATGGGTGGCGAGACATCCTTCAGCGTTGCGCTCATTTGATAAATTAATGAAAGCAGCAACTGGGAAGGACATCGTTGTGTTTTTAGACTACGATGGCACCTTGTCACCCATTGTTGATGACCCTGATCGCGCTTTTATGTCCGAGGAGATGCGTGCAGCAGTATGCGAAGTTGCTAAAATTTTCCCAACGGCAATAATTAGTGGAAGAAGCAGAGACAAGGTAAAAGACTTTGTGAAGTTAAGTAATGTGTATTATGCTGGAAGTCATGGGATGGACATAATGGGACCATCAATGCCAGTTAGATCTTCTGATGGCAACCAGTATAACATGGTTCTTGACACAACAAAGGGCACTGGAGTTCCCTTTCAACCTGCGAAGAATTTTTTGCCTACAATTCGAGAGATATTGAAAGTGTTAGAGAATAAAACAAGAGACATACAAGGTGCAAGGGTAGAGGACAATGGATTCTGCATCTCTGTGCACTTCCGGCAGGTTCAAGAAAAGGACTATGGTGAATTAGAAGAGAAGGTGAAGTCTATACTTGAAAAACATCCTGACTTCTGCTTAACCGAGGGTAAAAAGGTTATGGAAATAAGACCATCTATAGAATGGAATAAAGGTCACGCCCTAGAATATTTTCTTGACACACTAGGGCTAAGCAGTTCCAGCAATATCCTTCCGGTGTACATCGGTGATGATCGAACCGATGAAGATGCCTTTAAGGTGATACAGAGCAGAGGACAAGGTTATCCAATTATAGTATCTTCAATTCCGAAAGACACAAGAGCTATGTACTCTTTGCGGGACCCATCAGAAGTGTTAATTTTCTTGTCACGGCTGGCAAAGTGCAGGAAAACCACTTGTTCAGGCCTTTGA 1638 0.4365 MSASEVTFTRSHAFSLCTLAPSCACLSPAMKGFCFFLLGSMVVSVELATVHVSKFRPMFDWAGMAHMTGQRYRGVDSLISTPQRLVSASDAREVATCRSVLLTATCTVVLGFNFQEQLDIERPVFLIASFVNSGICGYDQSCQTQKEDIRIKNMEESTPFSFLLVIEQPREDYVGQIQILRWLDFRKSVLEGAVKNLCWRIKVNMKYMFLLIVTFKIIKKKLSKLQEAMGFQTPRASKPKVQPLTKSIPSTYDSWVARHPSALRSFDKLMKAATGKDIVVFLDYDGTLSPIVDDPDRAFMSEEMRAAVCEVAKIFPTAIISGRSRDKVKDFVKLSNVYYAGSHGMDIMGPSMPVRSSDGNQYNMVLDTTKGTGVPFQPAKNFLPTIREILKVLENKTRDIQGARVEDNGFCISVHFRQVQEKDYGELEEKVKSILEKHPDFCLTEGKKVMEIRPSIEWNKGHALEYFLDTLGLSSSSNILPVYIGDDRTDEDAFKVIQSRGQGYPIIVSSIPKDTRAMYSLRDPSEVLIFLSRLAKCRKTTCSGL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1546 545 Gene3D - 360 455 - -
Dere05g1546 545 CDD HAD_TPP 279 527 - -
Dere05g1546 545 Gene3D - 280 521 IPR023214 -
Dere05g1546 545 Coils Coil 417 437 - -
Dere05g1546 545 FunFam Trehalose 6-phosphate phosphatase 384 542 - -
Dere05g1546 545 NCBIfam HAD-IIB family hydrolase 280 498 IPR006379 -
Dere05g1546 545 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 221 540 IPR044651 GO:0004805|GO:0005992
Dere05g1546 545 NCBIfam trehalose-phosphatase 277 536 IPR003337 GO:0003824|GO:0005992
Dere05g1546 545 FunFam Trehalose 6-phosphate phosphatase 278 364 - -
Dere05g1546 545 FunFam Trehalose 6-phosphate phosphatase 379 455 - -
Dere05g1546 545 Pfam Trehalose-phosphatase 281 525 IPR003337 GO:0003824|GO:0005992
Dere05g1546 545 SUPERFAMILY HAD-like 279 536 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1546 Dere-ChrDere05 24997028 25004341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1546 280 535 Trehalose Biosynthesis Gene Families AT1G70290 25.547 2.07e-08 55.1