Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1543 ATGGTTTACAGCAGTTGTATAAGGTCTTTGGTTGTTCAAGTTGGAACCTTCACCAATAAAGTGCAATTCCACAACACTGTGAGAAGTTTGTATAAAGTTCCCTCCATTACTTATTCGTGGAATCGTGGATTTAAGACAAGCATAGGGATGATGGTTGATACAGGTGCTATGTCAAGAGCGGGACCCATTGTTGATATGTTGCCAGAGAAAGATGAAGATGGTGGGTTTGCCAGTGGAGGTTGGAAAAGTGAAGATGGAAGACTTAGCTGTGGGTATTCAAGTTTTAGAGGAAAGAGAGTTAGCATGGAGGATTTCTATGATATTAAGATATCAAATATTGATGGTCGGTCAGTATGCTTGTTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCTGAGTATTTGAAGGAGCATCTCTTTGATAACCTTATGAAGCATCCAAAGTTTTTGACAGATACCAAATTGGCTATAAGTGAAACATATCGACAAACTGATGCTGATTTTCTGGATTCTGAAAGGGATACTTTCCGGGATGATGGCTCAACTGCTTCAACAGCAGTTCTGGTTGATAACCATCTCTATGTTGCCAATGTTGGAGATTCTAGGACTATAATATCAAAAGCTGGCAAAGCAATAGCTCTATCTGAGGATCATAAGCCAAATAGAAGTGATGAGCGGAAGAGAATTGAGAATGCCGGGGGTGTTGTCATGTGGGCTGGTACTTGGAGGGTAGGAGGTGTACTTGCAATGTCTCGTGCTTTTGGTAACCGTATGTTGAAGCAGTTTGTTGTGGCAGAACCTGAGATCCAGGACCAGTTGATAGATGAAGAGCTCGAACTGCTGGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCGAATGATGACGCTGCTTCTCTTGCCCGCACTGAAGACGATCCCGAAGCAGCTGCTCGTAAGCTAACTGAAGCCGCTTTTACCCGAGGAAGTGCAGATAACATTACATGCATTGTGGTGCGCTTCCATCATGAGAAAGCAAACACAGCTAATCCTGAGAAAGCAGGTCCAGGATCCAGCTAG 1062 0.435 MVYSSCIRSLVVQVGTFTNKVQFHNTVRSLYKVPSITYSWNRGFKTSIGMMVDTGAMSRAGPIVDMLPEKDEDGGFASGGWKSEDGRLSCGYSSFRGKRVSMEDFYDIKISNIDGRSVCLFGIFDGHGGSRAAEYLKEHLFDNLMKHPKFLTDTKLAISETYRQTDADFLDSERDTFRDDGSTASTAVLVDNHLYVANVGDSRTIISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDQLIDEELELLVLASDGLWDVVPNDDAASLARTEDDPEAAARKLTEAAFTRGSADNITCIVVRFHHEKANTANPEKAGPGSS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1543 353 ProSiteProfiles PPM-type phosphatase domain profile. 89 335 IPR001932 -
Dere05g1543 353 CDD PP2Cc 89 335 IPR001932 -
Dere05g1543 353 Gene3D - 80 349 IPR036457 -
Dere05g1543 353 SMART PP2C_SIG_2 87 335 IPR001932 -
Dere05g1543 353 FunFam Probable protein phosphatase 2C 76 81 341 - -
Dere05g1543 353 PANTHER PROTEIN PHOSPHATASE 77 335 IPR015655 GO:0004722|GO:0006470
Dere05g1543 353 SMART PP2C_4 79 333 IPR001932 -
Dere05g1543 353 SUPERFAMILY PP2C-like 86 336 IPR036457 -
Dere05g1543 353 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Dere05g1543 353 Pfam Protein phosphatase 2C 91 328 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1543 Dere-ChrDere05 24970020 24973975 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1543 1 346 PP2C-type Phosphatase Gene Family AT5G53140 69.832 0.0 510