Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1541 ATGAATATTCGGCAAGAGAAGTTTGTGAGGTTCCAGGATTGGAAATCAGAGAAGGGTTCTGAAAGCCAATACTCTACAAATAACATAACACACTCAAGGAGAATTAGAAGTACATTAAGTTCAGTTTCAGAAAAGTTTCAAAGAGGCTTGGAATCTGGTTCTGAGAGGATAAAGAGAATTAGAAGGTCGTTCAAATCTTGGCCCTCTAACAGTCATCTGACTAGGAGTTTCAGTTCTAGAAAGAAAATCCTTGATCCACAGGGCCCATTCCTTCAGAAGTGGAACAAGATATTTGTATTATCTTGTGTTATTGCTGTATCACTTGATCCTTTATTCTTTTATGTCCCTGTCATTGATGATGAGAAGAAATGCCTTTCATTGGACAACAAGATGGAGATTACAGCAACTGTTCTAAGGTCTTTTTCAGATATTTTTTATATAGTCCACATAATTTTCCAATTTCGTACTGGATTTATTGCACCTTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAAAGAGGTATCTGTCATCATACTTCTTTATTGACATTCTTGCCGTTCTTCCCCTCCCGCAGGTGGTGATTTTAATTATCATTCCGAAGATGAGAGGCTTTAAATCATTGAACACGAAGAACTTGCTGAAATTTGTTGTTTTCTTCCAATATGTGCCAAGGGTTTTACGAATCATTCCATTATATAAAGAAGTGACAAGGACCTCTGGCATTATCACTGAAACTGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTGGCAAGTCATGTTGTGGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAGACTACATGCTGGCAAGAAGCCTGTCCAAGAAATACTTCCTGCAACAAGGCAGATTTGTATTGTGATGATAGGCGAGGGCTGAGCAAGATTGCTAAATTCTTGAATGCTTCTTGCCCAATACAGGATGCAAATTCAACGCTCTTCAATTTTGGAATATTTCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCAAGAGATTTCCCTCAAAAGTTTTTTTACTGCTTTTGGTGGGGCCTTAGAAATCTGAGTTCTCTTGGTCAGAACCTGGAAACAAGTACCTATGTTTGGGAAATTTTCTTTGCAGTTTTCATTTCCATCTCTGGTTTGGTATTGTTTTCATTTCTCATTGGAAACATGCAGACATACTTGCAGTCAACAACTATAAGATTGGAAGAGATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATCGATTACTCCCAGATAGTCTAAGAGAGCGAATCAGACGGTATGAACAATACAAATGGCAAGAAACCAGAGGTGTCGATGAAGACAATTTGATCAATAATCTTCCCAAGGATTTGAGAAGGGACATTAAGCGTCATCTTTGCTTAAATCTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTGCTGGACGCAATGTGTGACTGTCTCAAGCCAGTGCTTTATACTGAAGAAAGCTGCATTGTCCGGGAAGGAGACCCTGTCAATGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACTATGACAACTAATGGCGGAAGAACAGGCTTTTTCAACTCTGAATACCTCAAGGCCGGTGACTTCTGCGGTGAGGAGCTTCTTACATGGGCTTTAGACCCTCATTCTTCGTCCAATCTTCCTATCTCAACCAGGACAGTTCAAACCCTATCAGAAGTTGAAGCCTTTGCCCTAAAAGCTGATGACTTGAAGTTTGTGGCATCTCAGTTTCGACGTCTTCACAGTAAGCAACTTCGCCACACTTTCAGGTTCTATTCACAACAGTGGCGTACATGGGCTGCATGTTTCATACAAGCAGCATGGCGCCGCTATTGTAAGAAGAAGCTTGAAGAGTCTCTCCGGGAAGAGGAGAATAGGCTGCAACATGCTTTGGCCAAGGCAGGTAATAGCTCACCTAGTCTAGGTGCCACAATATATGCTTCTAGATTTGCTGCTAATGCACTGCGAGCTTTACGTCGTAATGGCACTCGGAAGACAAGGGTACCAGAGAGAATACCACCCATGCTGCTTCAGAAGCCTGCAGAACCTGATTTTACTGCTGAAGAGCAATAG 2148 0.4143 MNIRQEKFVRFQDWKSEKGSESQYSTNNITHSRRIRSTLSSVSEKFQRGLESGSERIKRIRRSFKSWPSNSHLTRSFSSRKKILDPQGPFLQKWNKIFVLSCVIAVSLDPLFFYVPVIDDEKKCLSLDNKMEITATVLRSFSDIFYIVHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLSSYFFIDILAVLPLPQVVILIIIPKMRGFKSLNTKNLLKFVVFFQYVPRVLRIIPLYKEVTRTSGIITETAWAGAAFNLFLYMLASHVVGAFWYLFSIERETTCWQEACPRNTSCNKADLYCDDRRGLSKIAKFLNASCPIQDANSTLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLETSTYVWEIFFAVFISISGLVLFSFLIGNMQTYLQSTTIRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYEQYKWQETRGVDEDNLINNLPKDLRRDIKRHLCLNLLMRVPMFEKMDEQLLDAMCDCLKPVLYTEESCIVREGDPVNEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYCKKKLEESLREEENRLQHALAKAGNSSPSLGATIYASRFAANALRALRRNGTRKTRVPERIPPMLLQKPAEPDFTAEEQ 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1541 715 Gene3D Jelly Rolls 484 604 IPR014710 -
Dere05g1541 715 ProSiteProfiles cAMP/cGMP binding motif profile. 486 570 IPR000595 -
Dere05g1541 715 Pfam Ion transport protein 94 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere05g1541 715 FunFam Cyclic nucleotide-gated ion channel 1 484 602 - -
Dere05g1541 715 Pfam Cyclic nucleotide-binding domain 507 597 IPR000595 -
Dere05g1541 715 Coils Coil 638 658 - -
Dere05g1541 715 Gene3D Helix hairpin bin 413 477 - -
Dere05g1541 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 58 710 - -
Dere05g1541 715 SMART cnmp_10 486 617 IPR000595 -
Dere05g1541 715 CDD CAP_ED 486 617 IPR000595 -
Dere05g1541 715 SUPERFAMILY Voltage-gated potassium channels 85 408 - -
Dere05g1541 715 SUPERFAMILY cAMP-binding domain-like 415 608 IPR018490 -
Dere05g1541 715 Gene3D - 96 410 - -
Dere05g1541 715 MobiDBLite consensus disorder prediction 687 715 - -
Dere05g1541 715 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1541 Dere-ChrDere05 24936684 24943606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1541 1 714 Ion Channels AT5G53130 79.666 0.0 1156