Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1538 ATGAAACGTCACCAGCCGCCGCCCACGGCGGATCTCCGGCAGTTTGCCACTGATTCCGAAACTATATGCCGTGACACTCTTTCGAAGTTGAAGAATGCTCGACTGAGAAGGCTCAAAATCCGGCGACTGAAGTATACTTGCGAAGCGAAAATCCACGTCGCCTCCGGAGATCGGACGGAGGAGAGAAACTGTTTTGGGTCGGATAGTAAAGATAAAAAGATTCACGAATCGATGAAGATATCGTTGTCGTTAACCACGTCGTCGCAGCAGAAGGATCGCCAGACGATGGCGCCAAACGATGCCGTTTTGGCGGCTTTTGGAGGCGAGAAATACAAAGAGAGTTGCGGCAACGTGGAGGAGTTATCTTACGGTTCGGTGTCAGTGATAGGCAGTAGGAGAGAGATGGAAGATGCGGTGAGCATAGAGATGGGGTTCGTAGTGAAGCAAAGGGCGAAGTGTGACTTCTTTGCGGTTTATGACGGCCACGGTGGGTCCCAGGTGGCGAAAGCGTGCCGGGAGCGATTGCACCAATTGGTGGCGGAAGAATTGGAAAGGCATGGGAGAAATGGTTGTGAAGTGGATTGGGAAGGGATGATGGAGTGGTGTTTTGGTAAAATGGATAGCGAGTTGGCCGATAATGCGGAAGTCCGGACGGTGGGTACTACGGCGGTTGTGGCCGTGGTAGCAAAAGATGAGGTGGTTGTGGCCAATTGCGGTGATTGTAGGGCGGTGATGGGAAGAGGAGGTGAGGCCTTTGCCTTGTCTGATGATCACAAGCCTGACAGGCCTGATGAGTTGATGCGAATCGAAGCCGCTGGTGGAAGGGTCATAAACTGGAATGGCCAACGCGTGCTAGGAGTTCTTGCTACCTCCAGATCTATTGGAGACCAATACCTTCGCCCATATGTAATACCGAAACCAGAAGTGACAGTGACGAAGCGAACTGACGAGGACGAGTTTCTCATACTAGCGAGCGATGGCTTGTGGGATGTGATCTCGAGTGAAGCTGCGTGCCAGGTCGTAAGGAAATGTCTGAGTGGTCAAACGAAACGAAATTCGCAAGAGGTTGGGAGTCAAAGCCTCGCTGCCGAGGCTGCAGCTCTGTTAGCTGAACTAGCGATGGCTAAGGGAAGCAGAGACAACACGAGCGTGATAGTAGTTGAGCTGAGGAACCATAATAATGACATCTAG 1191 0.5189 MKRHQPPPTADLRQFATDSETICRDTLSKLKNARLRRLKIRRLKYTCEAKIHVASGDRTEERNCFGSDSKDKKIHESMKISLSLTTSSQQKDRQTMAPNDAVLAAFGGEKYKESCGNVEELSYGSVSVIGSRREMEDAVSIEMGFVVKQRAKCDFFAVYDGHGGSQVAKACRERLHQLVAEELERHGRNGCEVDWEGMMEWCFGKMDSELADNAEVRTVGTTAVVAVVAKDEVVVANCGDCRAVMGRGGEAFALSDDHKPDRPDELMRIEAAGGRVINWNGQRVLGVLATSRSIGDQYLRPYVIPKPEVTVTKRTDEDEFLILASDGLWDVISSEAACQVVRKCLSGQTKRNSQEVGSQSLAAEAAALLAELAMAKGSRDNTSVIVVELRNHNNDI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1538 396 FunFam Protein phosphatase 2C 51 115 395 - -
Dere05g1538 396 Pfam Protein phosphatase 2C 123 382 IPR001932 -
Dere05g1538 396 ProSitePatterns PPM-type phosphatase domain signature. 155 163 IPR000222 GO:0043169
Dere05g1538 396 ProSiteProfiles PPM-type phosphatase domain profile. 122 389 IPR001932 -
Dere05g1538 396 SMART PP2C_4 112 387 IPR001932 -
Dere05g1538 396 PANTHER PROTEIN PHOSPHATASE 86 389 IPR015655 GO:0004722|GO:0006470
Dere05g1538 396 Gene3D - 118 395 IPR036457 -
Dere05g1538 396 SMART PP2C_SIG_2 142 389 IPR001932 -
Dere05g1538 396 CDD PP2Cc 122 389 IPR001932 -
Dere05g1538 396 SUPERFAMILY PP2C-like 120 392 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1538 Dere-ChrDere05 24915159 24917536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1538 109 390 PP2C-type Phosphatase Gene Family AT2G29380 50.166 1.09e-89 273