Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1530 ATGTCTTCGACTCTGCTGGAGGTGACTCGGGCAGCTCATGAGGAGGTGGAGCGGCTTGAGCGGCTGATAGTGAAGGACCTCCAAAATGAACCGGCGTCGAACAAGGACCGCTTGTTTCAGAGTCATCGTGTCCGAAACTTGATTGATACTATCACCTCTAACACCGAAAAGCTCATTGAAATATACGAAGATAAAGACAATGCAAGGAAGGATGAGATTGCTGCACTGGGGGGTCAAACTGCAACTGGGACAAATGTGTTTAGTGCCTTTTATGATAGACTGAAAGAGATACGGGAGTATCATAGAAAGCACCCAGCTGCACGTGTTGTTGATGCGAATGATGACTATGAAGAACTTCTTAAAGAGGAGCCTCAAATTGAGTTTAGTGGAGAGGAAGCTTTTGGGCGATACTTAGACATGCATGAGTTGTACTATCAGTATATCAATTCCAAATTTGGAGAGCCAGTCGAGTATTCTGCTTATCTTGATGTTTTCTCACAAACAGAGAAGATCCCACGCAAATTAAAGTTGACTAGGCAGTTCAGGGAATATATGGAGAATCTTTTGGAGTATCTGATATATTTTTTCCAGCGGACAGAACCCTTGCAAGATCTGGATCGAATTTTCTCTAAGGTAGCAACTGAGTTTGAAGAAAATTGGGCCACAAACAATGTACCTGGATGGGAGAATGACAGTCATGAGAATGGACATGTACCTGCTGAGCACTCTGCAATTGATCTTGATTATTACAGTACAGTTGAAGAGCTTATGGAAGTGGGTCCTGAAAGGTTAAAAGAGGCATTGGCTGCATTAGGACTCAAGACTGGGGGTACTGTACAGCAACGTGCAGAGAGGCTGTTCCTTACAAAGCACACACCTCTTGAAAAGTTGGACAGGAAGCATTTTGCCAAGGGACCACGAGGTTCAGAAAAAAATGGCATTGCTAATGGTGCTGCTGCAGCCCCACAACAAGATGAAAATTCAAAAGAAATTGCACTAATGGAGGCCAAAATGAAAAAGCTATGTGATCTATTACAAGAGACAATTGCACGAACAAAAGACAATGTTGTGAAGAAGCAAGCCTTGACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAAACGCAGGAGGAAACTGAAAGTGAAGACGAGGAGCAGCAGATTTATAATCCCCTAAAATTGCCAATGGGATGGGATGGAAAACCTATACCCTATTGGCTTTATAAGCTACATGGTCTGGGCCAGGAATTCAAGTGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTAGAGCTTTTGAACGGCATTTTAAAGAATGGCGCCATCAACATGGGATGCGTTGTCTTGGCATACCAAATACTAAAAACTTTAACGAAATCACATCAATCGAGGAAGCGAAGGATCTTTGGAAAAAGATACAGGAAAGGCAGGGAGTGAACAAGTGGCGCCCAGATCTGGAGGAAGAATATGAAGATAAAGAAGGCAACATCTACAATAAGAAGACTTACACTGATTTACAGCGCCAGGGACTGATATAA 1542 0.4313 MSSTLLEVTRAAHEEVERLERLIVKDLQNEPASNKDRLFQSHRVRNLIDTITSNTEKLIEIYEDKDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRKHPAARVVDANDDYEELLKEEPQIEFSGEEAFGRYLDMHELYYQYINSKFGEPVEYSAYLDVFSQTEKIPRKLKLTRQFREYMENLLEYLIYFFQRTEPLQDLDRIFSKVATEFEENWATNNVPGWENDSHENGHVPAEHSAIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGPRGSEKNGIANGAAAAPQQDENSKEIALMEAKMKKLCDLLQETIARTKDNVVKKQALTYEEIEAEREEEETQEETESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKKIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1530 513 MobiDBLite consensus disorder prediction 367 387 - -
Dere05g1530 513 ProSiteProfiles Zinc finger matrin-type profile. 418 449 IPR000690 GO:0003676|GO:0005634|GO:0008270
Dere05g1530 513 MobiDBLite consensus disorder prediction 367 386 - -
Dere05g1530 513 Pfam Replication stress response SDE2 C-terminal 224 304 IPR025086 -
Dere05g1530 513 PANTHER SPLICING FACTOR SF3A-RELATED 228 312 - -
Dere05g1530 513 MobiDBLite consensus disorder prediction 301 327 - -
Dere05g1530 513 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Dere05g1530 513 Pfam SF3a60/Prp9 C-terminal 394 513 IPR024598 GO:0000398|GO:0003723|GO:0005681
Dere05g1530 513 Coils Coil 357 386 - -
Dere05g1530 513 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 175 IPR031774 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1530 Dere-ChrDere05 24812659 24820761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1530 1 513 C2H2 Transcription Factor Family AT5G06160 76.608 0.0 777