Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1524 ATGATAATCAAGCGGAACCTGAAAACCCAAATGCCGAGTCTGAAACGGTGCAAGCTCGGTGACTCGGCGGGTGACGACGATGACTGCTCTGCGGCTAGGAAGAAGAGGAAGACTAATGGGTATTACCCTTTGAATCTTCTCGGCGAAGTCGCTGCCGGTATACTTCCTGTGAGCTCCCATGGATTACTAGGCGCTGGTGTTTCTTCCGAGAAGGGCTTTTCTGCATCGGGGTGTACGGATGTCTCGTGCTCCCCTGTCGAGGTGGAGTCAAAGTCGAAGGGTGGGAACTCTGTGACAGCTAATATGAATCGACCTGCGGAGGAACCACGGCCGCCGCTGGTCAGAACGTCAAGAGGTCGAGTTCAGGTACTACCTTCGCGTTTTAACGACTCGGTTATTGAGAATTGGAGGAAAGAGAGTAAGACGAGCTCCCGTGATTATAGTTTTGAAGACGAACTTGATAGTAGAAAGGAGAAATTCAGTTTTAAGACTCCGAAACCTTGCAATCAGAATACAAGAAAAGGGAGAAACGATGATAAAATTGGCTACAAGTCTCGCAAATATGCTGCATTGTGTGAGGAGTATGAGGCAAGAGAGGATGGGCGTACAAGGTATAGGAATTTTGATATGAGCAAGTATTCAGCATCGCGTAGCGCACTCAACTCAAAGCGCGAGCAATTAATTGAAGATGAGAGACGCGGATTTATGGATATGGAGGAAACTGATTTAACCGGCAATGAGAGATTTTTGAAGGAGAATGACGATAGAAAATGTGAATTATACGGACCAGAAGACTTTTACGCGGGTGATATAGTGTGGGCCAAAGCGGGGAAGAAAGAGCCTTTTTGGCCAGCCATTGTCATTGATCCGATGACTCAGGCACCTGAGCTGGTCCTGAGGTCTTGTGTAGCTGATGCAGCTTGTGTGATGTTTCTCGGGTACTCTGCGAATGAAAATCAAAGGGACTATGCATGGGTGAAGTATGGGATGATTTTTCCATTTATAGATTATGTAGATAGGTTTCAGGGACAGATTGAGTTGAGTTACTATAACCCCTCTGATTTTCAAGTGGCAATAGAGGAGGCATTCTTGGCAGATCGGGGGTTTACAGAGAAGTTGATAGCAGATATAAATATAGCAGCTGGCAACACGGGGTATGATGATGCCATTCTAAGAGGCATTCAGGAGGCCACTGGTTCAAAGCAGTACGCGGGATGTCACTTTCTGAGCCAGGATTTATTTGATAAGAGGAAAGACACACCACTCTGCGAAGCTTGTGGATCAGATCTTCCTTTCAAAATGTTAAAGAAAACAAAGGATTCAACTCCTGGTGGCCAATTTTTGTGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGTAAGGTGTGGGTACATGCGGAATGCGACAAAATTTCCAGTAACCTTTTCAAGAATCTTGGAGGCACTGATTATTACTGCCCTACCTGTAAAGCAAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAATGGACCAAGAACAGCGGACAGTTAGTGCTTCCTAACAAGGTCACAGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCTAGCCTTCACTTAGTTGTGTGCAAATGTGGCTTTTGTGGGACAGAAAAGCAAGCACTTAGTGAATGGGAACGACATACAGGCTCCAAATCAAGAAATTGGAGAACAAGTGTTAGGGTGAAAGGCTCCATGCTGCCGCTGGAACAATGGATGCTGCAGTTAGCAGAATTTCATGCCAATGCTCTAGTTTCTTTCAAACCTAAAAAACCTTCTTTAAAAGAAAGGAAGCAGAAGTTGCTTACATTTTTGCAAGAGAAGTATGAACCTGTGAATGCTAAGTGGACAACAGAACGGTGTGCTGTATGTAGATGGGTAGAGGATTGGGACTATAATAAAATTATTATTTGCAACAGATGCCAGATAGCCGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAACGAGAGTGTTGTCTTTGTCCTGTAAAGGGTGGTGCTCTAAAGCCAACTGATGTGGACTCGTTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTCTCTTTTGCCAGTGATGAAAAGATGGAGCCTGCTTTGGGCATTTTGAGTATTCCATCTAATTCTTTCGTGAAGATTTGTGTTATATGTAAGCAAATTCACGGTTCATGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGGTATCGCATGGAGTTGCATTGTTTGGAGAAAAATGGTAGGCAGACTACAAAAATGGTTTCTTATTGTGCATACCACAGGGCTCCAAATCCAGACACTGTTTTGATTATGCAAACCCCTTTGGGGGTTATTTCAACTAGAAGTCTTCTCCAAAATAAGAAAAAATCTGGGTCAAGGTTGATTTCGTCCAATAGAATAAAGCTAGAAGACACTCCTGTAGAAAACATTGAGCACGAACCATTTTCTGCTGCTAGGTGCCGTGTGTTTCAAAGAACAAATTTTAGCAAAAAGAGAGCTGCGGATGAAGCCATTTCTCATCGAGTGAAGGGTCACTACCATCATCCTTTAGACGCAATACAGAGCTTAAATGCATACAGGGTGATAGAGGAGTCTCAGGCATTTTCTTCTTTTAGAGAACGTCTGCACCACTTACAGAGAACTGAACATGAACGAGTTTGCTTTGGTAGATCAGGAATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATCGCTGATCTGAGGGAGGCACACTATAAGATAGAAGGCAAAGACTGCTATCTTTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGAAATATAGCCCGGCTGATCAACCATTCTTGTATGCCGAATTGCTATGCAAGAATTATGAGTGTGGGTGATGATGAGAGTCGTATTGTACTCATTGCCAAGACCAATGTACCTGCTGGTGATGAACTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAAAACAAAGTCCCATGTTTATGTAAAGCTCCAAATTGCCGGAAATTCATGAATTAG 3264 0.4308 MIIKRNLKTQMPSLKRCKLGDSAGDDDDCSAARKKRKTNGYYPLNLLGEVAAGILPVSSHGLLGAGVSSEKGFSASGCTDVSCSPVEVESKSKGGNSVTANMNRPAEEPRPPLVRTSRGRVQVLPSRFNDSVIENWRKESKTSSRDYSFEDELDSRKEKFSFKTPKPCNQNTRKGRNDDKIGYKSRKYAALCEEYEAREDGRTRYRNFDMSKYSASRSALNSKREQLIEDERRGFMDMEETDLTGNERFLKENDDRKCELYGPEDFYAGDIVWAKAGKKEPFWPAIVIDPMTQAPELVLRSCVADAACVMFLGYSANENQRDYAWVKYGMIFPFIDYVDRFQGQIELSYYNPSDFQVAIEEAFLADRGFTEKLIADINIAAGNTGYDDAILRGIQEATGSKQYAGCHFLSQDLFDKRKDTPLCEACGSDLPFKMLKKTKDSTPGGQFLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYYCPTCKAKFDFELSDSEKSQPKVKWTKNSGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKSRNWRTSVRVKGSMLPLEQWMLQLAEFHANALVSFKPKKPSLKERKQKLLTFLQEKYEPVNAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDSLWVHVTCAWFQPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTRSLLQNKKKSGSRLISSNRIKLEDTPVENIEHEPFSAARCRVFQRTNFSKKRAADEAISHRVKGHYHHPLDAIQSLNAYRVIEESQAFSSFRERLHHLQRTEHERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREAHYKIEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVPAGDELTYDYLFDPDEPDENKVPCLCKAPNCRKFMN 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1524 1087 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1087 IPR025780 -
Dere05g1524 1087 MobiDBLite consensus disorder prediction 89 103 - -
Dere05g1524 1087 Pfam PHD-finger 668 702 - -
Dere05g1524 1087 MobiDBLite consensus disorder prediction 161 180 - -
Dere05g1524 1087 PANTHER PHD FINGER PROTEINS 15 528 - -
Dere05g1524 1087 ProSiteProfiles SET domain profile. 945 1062 IPR001214 GO:0005515
Dere05g1524 1087 Pfam SET domain 956 1061 IPR001214 GO:0005515
Dere05g1524 1087 SUPERFAMILY Tudor/PWWP/MBT 260 365 - -
Dere05g1524 1087 CDD PHD_TCF19_like 462 512 - -
Dere05g1524 1087 Gene3D SET domain 842 1087 IPR046341 -
Dere05g1524 1087 ProSiteProfiles Zinc finger PHD-type profile. 459 515 IPR019787 -
Dere05g1524 1087 ProSiteProfiles Zinc finger PHD-type profile. 653 704 IPR019787 -
Dere05g1524 1087 ProSiteProfiles PWWP domain profile. 268 337 IPR000313 -
Dere05g1524 1087 CDD SET_SETD1-like 932 1083 - -
Dere05g1524 1087 Pfam PWWP domain 269 362 IPR000313 -
Dere05g1524 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 704 IPR013083 -
Dere05g1524 1087 FunFam Histone-lysine N-methyltransferase 705 824 - -
Dere05g1524 1087 SUPERFAMILY FYVE/PHD zinc finger 460 516 IPR011011 -
Dere05g1524 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 517 IPR013083 -
Dere05g1524 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 824 IPR013083 -
Dere05g1524 1087 Pfam PHD-finger 461 514 IPR019787 -
Dere05g1524 1087 ProSiteProfiles Extended PHD (ePHD) domain profile. 707 822 IPR034732 -
Dere05g1524 1087 Pfam PHD-zinc-finger like domain 709 821 - -
Dere05g1524 1087 SMART PostSET_3 1071 1087 IPR003616 -
Dere05g1524 1087 SUPERFAMILY SET domain 938 1084 IPR046341 -
Dere05g1524 1087 CDD ePHD_ATX3_4_5_like 710 821 IPR041955 -
Dere05g1524 1087 CDD PHD_ATX3_4_5_like 655 701 IPR042011 -
Dere05g1524 1087 FunFam Histone-lysine N-methyltransferase 643 704 - -
Dere05g1524 1087 Gene3D - 263 367 - -
Dere05g1524 1087 ProSitePatterns Zinc finger PHD-type signature. 656 701 IPR019786 -
Dere05g1524 1087 SMART PHD_3 655 702 IPR001965 -
Dere05g1524 1087 SMART PHD_3 461 513 IPR001965 -
Dere05g1524 1087 SMART PHD_3 766 822 IPR001965 -
Dere05g1524 1087 MobiDBLite consensus disorder prediction 89 114 - -
Dere05g1524 1087 FunFam Histone-lysine N-methyltransferase 919 1087 - -
Dere05g1524 1087 CDD PWWP_AtATX3-like 267 371 - -
Dere05g1524 1087 SUPERFAMILY FYVE/PHD zinc finger 654 718 IPR011011 -
Dere05g1524 1087 ProSiteProfiles Post-SET domain profile. 1071 1087 IPR003616 -
Dere05g1524 1087 SMART set_7 945 1068 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1524 Dere-ChrDere05 24769508 24779920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1524 656 821 C2H2 Transcription Factor Family AT3G14740 32.948 1.25e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere05g1524 zf-HC5HC2H_2 1.6e-27 CL0390