Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1517 ATGGAATACGGCAGGCTCCGGCCCTCCGACCCGGCCGGATCCTCCGACCGTCCCGCCGGCTCCGACGCTGCCATTGCTAGCCGAAGCAAGAAGAAATTAATCTTGCTGTCGGTACTCGCATTCACTTTAATTGTAGCATCTGCTGTCTCCGCCGTGTTCCTTGTTGGGATCCGGGCCCGGGCTTCGGGCAGAAATGGGCCGGCCATTAATGGGAGGCCCACACAGGCTATTTCGCGGGCTTGCAGCAAGACCCGTTTCCCCTCGCTGTGCGTGAAGTCGCTGTTGGAGTTTCCGGGTTCCGCCGCCGCGTCGGAGCAGGAGCTGGTCCACATTTCGTTCAACATGACGCTGCAGCGCCTGAGCAAGGCGCTCTATTCCGTTACCGGGATCTCGTCCGTCCAGATGGATCCACGTGTACGGTCGGCGTACGAGGACTGCCTCGAGCTCCTTGAGGATTCCGTGGACGCGCTGCTGCGCTCCCTCACCTCTGTGGCTCCGGGAGGCAGCAGCGACGGCCGCTCAACGGAAGACGTACTGACGTGGCTCAGCGCCGCCCTCACGAATCAAGACACGTGCACCGAGGGGTTCGCTGACACGATTGGGACCGTGAAGGATCAGATGGCCAATAACTTGAAGGACTTGTCGGAACTCGTAAGCAACTGTCTGGCGATATATTCGGGGAGCGGCGGCAACGACGACTTCTCAGGGGTTCCGATACAAAACAAGAGAAGACTAATGGGAGAGATCGATAATGGGGATATCTCGGGGAAATTCCCGACATGGTTGAACGCAAGAGAGAGGAGACTGTTGAGCTTGCCGGTGTCGGCGGTACAAGCCGACATTGTGGTGTCGAAAGACGGAAGTGGAACGGTGAAGACGATCACGGAGGCGATAAAGAAGGTGCCTGAACACAGCGGTCGCCGGATTATTGTGTACGTGAAGGCAGGAAGATACGAAGAGGAAAATTTGAAGGTGGGAAGGAAGAAAACTAATGTGATGTTCATAGGCGACGGGAAGGGCAAGACGGTCATTACAGGGGGAAGAAATGTTGTGGATGGCATGACCACGTTCCATACCGCCTCCTTCGCTGCTTCTGGGGCTGGTTTCATTGCACGAGATATGACGTTCGAGAACTACGCCGGGCCGGGGAAGCACCAGGCTGTGGCCCTTCGTATCGGAGCCGACCATGCGGTGGTGTATCGCTGCAACATCATCGGATACCAGGACACGTGCTATGTCCATTCCAACCGTCAGTTCTTCAGGGAATGTGACATTTACGGAACCGTTGATTTCATCTTTGGCAATGCAGCTGTGGTCTTCCAAAATTGTGGCCTCTACTCTCGGAAGCCCATGGCCCAACAAAAGAATACCATTACGGCCCAAAACCGAAAAGACCCGAATCAGAATACGGGTATATCCATTCACAACTGTCAGATCCGAGCCACTCCGGATCTTGAGGCGGCCAAGGGAAGCATCCCCACCTATCTGGGCCGTCCGTGGAAATTATACTCTAGAACCGTTTACATGCTATCCTACATGGGGGATCACATACATCCACGTGGATGGTTGGAGTGGAATGGCGCGTTTGCCCTCGACACATTGTACTATGGAGAGTACATGAATAGTGGGCCGGGTGCGGCTACTGGGAAACGGGTCAAATGGCCTGGGTATCGGGTCATCACATCAACGGCGGAGGCCAACCGGTTCACGGTGGGCCAATTCATCGCGGGGTCGTCGTGGCTGCCGTCGACAGGGGTGGCGTTTGTGGCTGGATTATCTAACTAA 1785 0.5591 MEYGRLRPSDPAGSSDRPAGSDAAIASRSKKKLILLSVLAFTLIVASAVSAVFLVGIRARASGRNGPAINGRPTQAISRACSKTRFPSLCVKSLLEFPGSAAASEQELVHISFNMTLQRLSKALYSVTGISSVQMDPRVRSAYEDCLELLEDSVDALLRSLTSVAPGGSSDGRSTEDVLTWLSAALTNQDTCTEGFADTIGTVKDQMANNLKDLSELVSNCLAIYSGSGGNDDFSGVPIQNKRRLMGEIDNGDISGKFPTWLNARERRLLSLPVSAVQADIVVSKDGSGTVKTITEAIKKVPEHSGRRIIVYVKAGRYEEENLKVGRKKTNVMFIGDGKGKTVITGGRNVVDGMTTFHTASFAASGAGFIARDMTFENYAGPGKHQAVALRIGADHAVVYRCNIIGYQDTCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCGLYSRKPMAQQKNTITAQNRKDPNQNTGISIHNCQIRATPDLEAAKGSIPTYLGRPWKLYSRTVYMLSYMGDHIHPRGWLEWNGAFALDTLYYGEYMNSGPGAATGKRVKWPGYRVITSTAEANRFTVGQFIAGSSWLPSTGVAFVAGLSN 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1517 594 FunFam Pectinesterase 73 228 - -
Dere05g1517 594 PANTHER PECTINESTERASE 46 582 - -
Dere05g1517 594 MobiDBLite consensus disorder prediction 1 22 - -
Dere05g1517 594 Gene3D - 274 592 IPR012334 -
Dere05g1517 594 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
Dere05g1517 594 Pfam Pectinesterase 280 577 IPR000070 GO:0030599|GO:0042545
Dere05g1517 594 Pfam Plant invertase/pectin methylesterase inhibitor 76 224 IPR006501 GO:0004857
Dere05g1517 594 CDD PMEI-like_3 80 224 - -
Dere05g1517 594 SMART PMEI_2 72 224 IPR006501 GO:0004857
Dere05g1517 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 227 IPR035513 -
Dere05g1517 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 225 IPR035513 -
Dere05g1517 594 SUPERFAMILY Pectin lyase-like 275 591 IPR011050 -
Dere05g1517 594 FunFam Pectinesterase 274 592 - -
Dere05g1517 594 NCBIfam pectinesterase inhibitor domain 65 225 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1517 Dere-ChrDere05 24639104 24642169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1517 1 594 Carbohydrate Esterase AT5G53370 66.444 0.0 828