LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g1499	ATGGATAGGCCACATTATACGAAACCCACGGAGATGGATTACTTCTTCAGCGATTTTGACTCACCAAACCTTGAGTACCCACATGGCTTCAACTCGTGCTATCCTCGACAGCAACCAGAAAAAGTATTGGATGTGTCACCATTAGAGGGACTGTGGGACATGGATTATTTGGTCCCACCTCCATTCGAAAGCATCCCACTTTGCTTCAATGAGTCCCCGGAACTCGAAAATTTCAGCTGTGAGTTCTCTGCTTTTGATTACAATTTCCCCCCACTTTATGAAGACTTTGTGATCGACCAAAAGCCCTTGACCTTTGTTCTGCCAAAACCCTCTCAATGCGATAGTATTCAAAGTCACTTTGGCCAAACTTCGAGTTCCAAGTTAATTGGAAATGGGTTTGGCTCTTCAATCAAACAAGAGGAGGAGAATCGTGATAGGGTTAACTGTGCTAGAAAGAAGAGGTCAGCTTCTCTGGAATTAGATGAGATAAGGAAGCATTTTAATGTTCCCATAACAACAGCAGCGAAAGAAATGAATGTGGGGTTGACCCTCCTGAAGAGAAGGTGCAGGGAACTCAATATCACCAGGTGGCCCCATAGAAAAATCAAGAGCCTGGAGTCCCTCATCAACAATGTAAAGGAACTGGGTTTGACAAATGAGGTAGCTATGTTGGAGAAGCATAAGAGGCTTATGGAGAAACTTCCAGATATGGAACTCAATGAGAAAACCAAGAAGCTGAGGCAGGCTTGTTTCAAAGCCAATTACAAGAGGAGGAGGACATTGGCACTTCAAGCCCAAGCATGA	804	0.4415	MDRPHYTKPTEMDYFFSDFDSPNLEYPHGFNSCYPRQQPEKVLDVSPLEGLWDMDYLVPPPFESIPLCFNESPELENFSCEFSAFDYNFPPLYEDFVIDQKPLTFVLPKPSQCDSIQSHFGQTSSSKLIGNGFGSSIKQEEENRDRVNCARKKRSASLELDEIRKHFNVPITTAAKEMNVGLTLLKRRCRELNITRWPHRKIKSLESLINNVKELGLTNEVAMLEKHKRLMEKLPDMELNEKTKKLRQACFKANYKRRRTLALQAQA	267

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g1499	267	ProSiteProfiles	RWP-RK domain profile.	145	226	IPR003035	-
	Dere05g1499	267	PANTHER	PROTEIN RKD4	119	266	IPR044607	GO:0003700
	Dere05g1499	267	Pfam	RWP-RK domain	158	205	IPR003035	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g1499	Dere-ChrDere05	24392823	24394046	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g1499	158	262	AtRKD Transcription Factor Family	AT5G53040	63.810	2.49e-42	143

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Dere05g1499		RWP-RK	1e-21	No_clan