Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1485 ATGGATTGCTTTATCAGCGACGACGAAGAATGTCGATTTTACGATGCCCAAGAGGATTTTCTGTCCATTGCTGATGCTGAATCCGATGGCGGCATAGACACACCCAACAGGACATCAAATTGTTCTGAATATGGAGTGTGGATTCGGAGCCCAAGGAGTGTTCGGGAGCGTCGCAGTAAGTTCATGAAGTGGATGGGGCTTAGTTCAGATCAAATTGCTGTTGAAAATTCAGTAGGTAGGAGTAGAATTGAAGAAAATAGTGGGGCTGTGACAAGAATCTCTGGTTTTGAAGATGAATTTTGTTCTAGTCGCTCTTCAATGTCTTGTTGGTCCATTGAGAATTCTTCAGAGTTTGGCTTAGTATGGGATAAGAAAATGGGTGATGGTAGCGACAAGGGTTCGGGTCAGTTGGTTGTTTCGGAGGAGCCTGAGGCTTCTGAGAAAGCCTCTGGGGAATCTCCCTCTTTCCAGTGTTTGATGGGTAAGGAGTTTGAGGATACTAATCTTTTTGATTGTAAGGTGAAGAGGTCTAGAAGGGGTTGGTTCAGGAGATTACGTTCAATAACATGCATGATTGATGGGGAAGTTGAAGGGGATAAAGGTAGACAGGAAGGCACTTGTCGATTCTCAGGGTGTAGGATCCAGAGAGTCAAGGTCCGCCAATTCAGGAAGCAAATGAAGGAACTTTCAGCACTTTTCATGGGGCAAGATTTTCAAGCTCATGAAGGTCCAATTTTGACCATGAAATTTAGTCCTGATGGGCAGTTTCTTGCCAGTGCCGGTGAAGATGGGATTGTGAGACTGTGGAAAGTGGTGGAAGATGGCAGATGTAATGAAATTGACACTCCAGAACCCGATCCATCATGCGTATACTTTACAGTGAATAATCTCTCTGAACTTACACCCCTGTTTATGGATAAGGAAAAAATGAGCAAAGGGAACAACCTGAGAAAAACATCAGATTCTGCTTGCATCATTTTGCCTCCCAAGGTCTTTCGGTTGTTGGAGAGACCATTGCATGAGTTACATGGGCATGAGGGTGAAATTTTGGATCTCTCTTGGTCAAACAACAATTATCTGCTGTCATCTTCTGTTGACAAAACGGTTCGTCTATGGAGAGTGGGATATGACCATTGCCTGAAAGTTTTTTCACACAACAATTATGTGACATGCATACAATTCAATCCTGTGGATGATAATCATTTCATTAGCGGATCTATAGATGGAAAAGTGCGCATTTGGGCAATTTCTGATTGTCATGTTGTTGATTGGACTGATGTACGAGAAATTGTGACTGCTGTTTGTTATCGACCTGATGGGCAGGGAGGAATTATTGGCTCCATGACAGGCATTTGTCGGTTTTACAATGTATCAGAGAATCAATTACAGTTGGATTCCCAACTATGCTTACTTAATAAGAAGAAACTCCCCGGCAGACGGATAACTGGCTTTCAGTTTCTACCCCATGATTCTAGCAAAGTTATGGTTACCTGTGCTGATTCACAAGTCAGAATCCTTGATGGGCTTAATGTGGTTGGCAAATACAAAGGTTTCAGTGCTGGGAGTCATATTTCCGCATCTTTTACTTCAGATGGGAAACATATTTTATCAGCATGTGAAGATTCTAATGTATATCTATGGAACGTTAGTCAGGAACAGTCTAGTCCCACGAAAACTAAGAAGATTAGGTCTTGCGAGCGGTTCTTTTCAAATGCATCTGTTGCAGTACCTTGGTGTGGTTTGACATCTCAAAATACTGAAAATGAACATCAACAGGATGTTTCAGATCAGAGATCATCTCAAATTGTACGTCTCAATCCACCTGCTTCTTTTTCTCTTGGCCAAGAGCTTTGCTGTGAGTCCCCCAAGGGATCTGCAACTTGGCCTGAAGAAAAGCTTCATTCTTCAAGCCCCAAGGCCAGAAAATCTGCAATGCATAAATCTGTTTACAAGTTTTTGAAAGCTTCTTGCAAGAGTACCTCCAGTGCTCATTCATGGGGTCTGGTCATTGTGACCGCAGGCTGGGATGGACGGATAAGATCATTCCACAATTATGGGTTACCAGTAATCGTTTGA 2076 0.4273 MDCFISDDEECRFYDAQEDFLSIADAESDGGIDTPNRTSNCSEYGVWIRSPRSVRERRSKFMKWMGLSSDQIAVENSVGRSRIEENSGAVTRISGFEDEFCSSRSSMSCWSIENSSEFGLVWDKKMGDGSDKGSGQLVVSEEPEASEKASGESPSFQCLMGKEFEDTNLFDCKVKRSRRGWFRRLRSITCMIDGEVEGDKGRQEGTCRFSGCRIQRVKVRQFRKQMKELSALFMGQDFQAHEGPILTMKFSPDGQFLASAGEDGIVRLWKVVEDGRCNEIDTPEPDPSCVYFTVNNLSELTPLFMDKEKMSKGNNLRKTSDSACIILPPKVFRLLERPLHELHGHEGEILDLSWSNNNYLLSSSVDKTVRLWRVGYDHCLKVFSHNNYVTCIQFNPVDDNHFISGSIDGKVRIWAISDCHVVDWTDVREIVTAVCYRPDGQGGIIGSMTGICRFYNVSENQLQLDSQLCLLNKKKLPGRRITGFQFLPHDSSKVMVTCADSQVRILDGLNVVGKYKGFSAGSHISASFTSDGKHILSACEDSNVYLWNVSQEQSSPTKTKKIRSCERFFSNASVAVPWCGLTSQNTENEHQQDVSDQRSSQIVRLNPPASFSLGQELCCESPKGSATWPEEKLHSSSPKARKSAMHKSVYKFLKASCKSTSSAHSWGLVIVTAGWDGRIRSFHNYGLPVIV 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1485 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 271 IPR001680 GO:0005515
Dere05g1485 691 Gene3D - 204 474 IPR015943 GO:0005515
Dere05g1485 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 382 414 - -
Dere05g1485 691 PANTHER WD REPEAT DOMAIN 44 7 688 IPR040324 -
Dere05g1485 691 SUPERFAMILY WD40 repeat-like 237 681 IPR036322 GO:0005515
Dere05g1485 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 374 IPR001680 GO:0005515
Dere05g1485 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 374 - -
Dere05g1485 691 Gene3D - 475 607 IPR015943 GO:0005515
Dere05g1485 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 271 - -
Dere05g1485 691 Pfam WD domain, G-beta repeat 379 414 IPR001680 GO:0005515
Dere05g1485 691 Pfam WD domain, G-beta repeat 513 548 IPR001680 GO:0005515
Dere05g1485 691 Pfam WD domain, G-beta repeat 238 270 IPR001680 GO:0005515
Dere05g1485 691 Pfam WD domain, G-beta repeat 337 372 IPR001680 GO:0005515
Dere05g1485 691 PRINTS G protein beta WD-40 repeat signature 402 416 IPR020472 -
Dere05g1485 691 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Dere05g1485 691 PRINTS G protein beta WD-40 repeat signature 360 374 IPR020472 -
Dere05g1485 691 SMART WD40_4 508 548 IPR001680 GO:0005515
Dere05g1485 691 SMART WD40_4 417 456 IPR001680 GO:0005515
Dere05g1485 691 SMART WD40_4 467 507 IPR001680 GO:0005515
Dere05g1485 691 SMART WD40_4 376 415 IPR001680 GO:0005515
Dere05g1485 691 SMART WD40_4 335 373 IPR001680 GO:0005515
Dere05g1485 691 SMART WD40_4 646 683 IPR001680 GO:0005515
Dere05g1485 691 SMART WD40_4 231 270 IPR001680 GO:0005515
Dere05g1485 691 MobiDBLite consensus disorder prediction 129 154 - -
Dere05g1485 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 382 414 IPR001680 GO:0005515
Dere05g1485 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 525 557 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1485 Dere-ChrDere05 24286419 24289900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1485 334 563 U-box Gene Family AT2G33340 23.904 4.49e-08 54.3