Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1457 ATGTCACTACATAAACCGCTAGCTTTCTTGCTTATTTTGTGCAGCTCAGAGCCTTTAAACTTGCAGAAAACTCTGCTTTCGCGTCTGAAGAGCAGAGTTTCGGTTTTGCCTCTATTACACCCTTTATCTCGCTTGTTCTGCCCACTTTCTCTCATGTTTCTTCGCCCTTCAACACCTAAACCTTTCCCCAAATCATTAGCACTGGAAGTCAAAGGTGGAGTCCCAACTGCAGCAGGAAGTGAGGCCGTAGCTGTTTTCTCTTTCTGTGATGCTCCCAGTGCAGCAGTCGCTGAAGTTCCTTCTCTGAAGCTGGTCCTCTTTTCTTACTTCTTTCTCCATATGCTGACCCAGATTATTCCAGGTTGTCTGAGGGAAACTAGCTCTTGCGAATGCAGCAGTTTATGGCCCAGTTTGGAGGTCACTAGACACCCTCCTCGATCTCGAAGTCGAAGGCAGAAAATCTGCTCCCACAAGCGCAGAATTGGTCACCCTCTGCTCAGAAAACCCTATCGGCCAGAGGGAAGGGACGAAAGGAATTCAGTGGAAATGCAGATCTTCGTGAAAACCCTAACCGGGAAGACCATCACCCTTGAGGTCGAGTCCAGTGATACTATTGACAATGTGAAGGCTAAGATTCAGGACAAAGAAGGTATTCCGCCGGACCAGCAGAGGTTGATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGTACCCTCGCCGATTACAACATTCAGAAAGAATCAACATTACATCTTGTTTTGAGGCTTAGAGGTGGCATTATTGAACCATCTTTGATGGCACTGGCCAGGAAATACAATCAGGACAAGATGATCTGCCGCAAGTGTTATGCACGTTTACACCCGCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGGCACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAA 933 0.4802 MSLHKPLAFLLILCSSEPLNLQKTLLSRLKSRVSVLPLLHPLSRLFCPLSLMFLRPSTPKPFPKSLALEVKGGVPTAAGSEAVAVFSFCDAPSAAVAEVPSLKLVLFSYFFLHMLTQIIPGCLRETSSCECSSLWPSLEVTRHPPRSRSRRQKICSHKRRIGHPLLRKPYRPEGRDERNSVEMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1457 310 PANTHER UBIQUITIN 183 269 - -
Dere05g1457 310 ProSiteProfiles Ubiquitin domain profile. 183 258 IPR000626 GO:0005515
Dere05g1457 310 FunFam ubiquitin-60S ribosomal protein L40 261 310 - -
Dere05g1457 310 SUPERFAMILY Ubiquitin-like 182 258 IPR029071 -
Dere05g1457 310 Gene3D - 178 260 - -
Dere05g1457 310 FunFam Ubiquitin-60S ribosomal L40 fusion 183 260 - -
Dere05g1457 310 Pfam Ubiquitin family 185 256 IPR000626 GO:0005515
Dere05g1457 310 Gene3D - 261 310 IPR038587 -
Dere05g1457 310 CDD Ubl_ubiquitin 183 258 - -
Dere05g1457 310 Pfam Ribosomal L40e family 260 309 IPR001975 GO:0003735|GO:0005840|GO:0006412
Dere05g1457 310 PRINTS Ubiquitin signature 235 256 IPR019956 -
Dere05g1457 310 PRINTS Ubiquitin signature 193 213 IPR019956 -
Dere05g1457 310 PRINTS Ubiquitin signature 214 234 IPR019956 -
Dere05g1457 310 SUPERFAMILY Zn-binding ribosomal proteins 258 309 IPR011332 GO:0006412
Dere05g1457 310 ProSitePatterns Ubiquitin domain signature. 209 234 IPR019954 -
Dere05g1457 310 SMART ubq_7 183 254 IPR000626 GO:0005515
Dere05g1457 310 SMART Ribosomal_L40e_3 259 310 IPR001975 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1457 Dere-ChrDere05 23997307 24002022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1457 183 310 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 2.10e-90 263