Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1455 ATGATGGGGGGTGATGATGAGTATATTCAAGCATCAGAAGAAAGCTTCAGCTGCTCAGAGCCACCTCAAAATCCAAGGAAGAAAAACAAAAAGGTGGAAAACAAGAGGAGGTTTAGTGACGAACAAATCAGATCACTGGAGTGCATATTTGAGTCAGAGTCGAAGTTGGAGCCAAGGAAGAAGGTGCAAGTAGCAAGAGATCTTGGGCTGCAACCTCGCCAAGTTGCCATATGGTTCCAGAACAGAAGAGCCAGAGGGAAATCAAAGTGGATAGAGCAAGAATACAAGAAGCTCAGAGATGAGTATGACAATTTAGTATCCAGGTTTGAGTCCCTTAAGAAAGACAAGGAGTCCTTGCAAGTGGAGTTGCAGAAGCTAAATGATCTAATGGAGACATCTCGTGATGGTAAGAGAGAAAATAGCACAGATTGGAGGAGTGAAGTAAAGCCTAGTTTTTCAAATGACGGTTTGGAGGTCAGAGAAGGCATGCATTTACAAGATCAAAGTGAAAGGAGCAAGAAGAATGGGTATTCTGAGGGCACAGGACACCAACTTCTGAGAATGGATGAGCTTGAAAGATGGTACAGTGGCGATCCAAGTGGTCTCTTAGATCAACCTTGTAGTAGTTCACAATGGTTTGATTTCTGGACTTGA 654 0.4327 MMGGDDEYIQASEESFSCSEPPQNPRKKNKKVENKRRFSDEQIRSLECIFESESKLEPRKKVQVARDLGLQPRQVAIWFQNRRARGKSKWIEQEYKKLRDEYDNLVSRFESLKKDKESLQVELQKLNDLMETSRDGKRENSTDWRSEVKPSFSNDGLEVREGMHLQDQSERSKKNGYSEGTGHQLLRMDELERWYSGDPSGLLDQPCSSSQWFDFWT 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1455 217 CDD homeodomain 35 90 IPR001356 GO:0003677
Dere05g1455 217 Pfam Homeobox associated leucine zipper 90 130 IPR003106 GO:0006355|GO:0043565
Dere05g1455 217 Coils Coil 81 129 - -
Dere05g1455 217 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
Dere05g1455 217 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Dere05g1455 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 26 165 IPR045224 GO:0003700
Dere05g1455 217 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Dere05g1455 217 Gene3D - 32 94 - -
Dere05g1455 217 MobiDBLite consensus disorder prediction 130 182 - -
Dere05g1455 217 MobiDBLite consensus disorder prediction 130 145 - -
Dere05g1455 217 MobiDBLite consensus disorder prediction 1 38 - -
Dere05g1455 217 FunFam Homeobox-leucine zipper protein ATHB-7 13 89 - -
Dere05g1455 217 SMART HOX_1 32 93 IPR001356 GO:0003677
Dere05g1455 217 Pfam Homeodomain 35 87 IPR001356 GO:0003677
Dere05g1455 217 MobiDBLite consensus disorder prediction 160 177 - -
Dere05g1455 217 SUPERFAMILY Homeodomain-like 17 88 IPR009057 -
Dere05g1455 217 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Dere05g1455 217 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1455 Dere-ChrDere05 23986558 23987314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1455 26 217 Homeobox Transcription Factor Family AT2G46680 39.485 2.12e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere05g1455 Homeodomain 9.3e-16 CL0123