Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1440 ATGAACATGAAGCATATTCATCTCCCATTGCTCCTTTGTTTCTTCCTACTCCTTCATCTTCATGGCATCCTCTGTAAGAAGGAAGCAAGTCTTAACAAAGACACCGACAAAGATGCTCTCTTATCATTCAAATCCGTCATCTCCGACCCAAACAAAGCTCTCTCTGACTGGTCGTCAACTTCAGATTCCTCTCACTGCAACTGGCATGGTGTATCCTGCTCCAAAGTTGGAAGCAGAGTCCAATCCCTTAGCCTGCCAGGACTTGGCCTCTCTGGGAAACTCCCCTCTTCTCTCTCCAACCTCTCTTATCTGCACTTGCTTGATCTCTCCAACAACTCATTTCACGGCCAAATTCCCCCACAGTTTAGCCGCCTTTCACTCCTCAATATGCTCTCGTTAGCTTTCAACAACCTCAGTGGAACGCTTCCACCACAATTGGGCCTTCTTCACCGGCTCCAATTTCTGGACTTGTCTATCAACAGTCTCACTGGTCCACTCCCTCGACATTTCGGAAACCTCTCCTCTCTTACTGGTCTTTTCTTAGCAAGGAACCATCTTCTTGGAAAAATTCCAAGTGAATTGGGTAATCTTTGTAATCTTTCTCATCTTCACCTCTTTGATAACTATTTCTCTGGGGATTTTCCTTTTCGTATTTTCAACATTTATTCGCTAGTCTTCTTGTCTGTAACAAGCAATCACCTTTCGGGGAAGTTACCACAGGATATTGGTCATTCTCTTTCAAACCTCAAGGGCCTCTTTCTAGCAAACAATAGGTTCGGAGGAGAGATTTCTAGCTCCATATCCAATGCTTCGCAGCTCCATGATCTCGATCTGTCCAACAATGAGTTTCATGGGTGGGTTCCTCTGTTCAATAACATGAACGAACTTACCTATCTGAATCTGGGCCGAAACCATTTCTCATCGACGTCACTGCGCAATTCTCAGCTCTTCGGTTCCCTAGGAAACTCCACGCAATTGCAATTTCTCAAACTCCATAACAATCGGTTAGCTGGAGAACTTCCAAGCTCTGCTGCGAATCTGTCGAGCAATCTCCAACATTTTTGTGTTGCTGGCAATTCGTTGAGCGGCAGAATCCCTCTGGGGATGGGGAAATTTCGAAACCTAGAGTTCTTGACTTTAGAAAGTAATTTTTTCACTGGAGAGATACCCACGGACATCGGAGCACTGCACAAACTGGTGCAACTCGTAGCATACCACAATAGGCTGTCCGGAGAAATTCCAAATATTTTAGGCAATTTTACCCAACTAAGTATATTTGACCTGGGTTATAATCAGTTTGCGGGTAATGCCCTACACGGTCCATTTCCTTCCGAAGTCAACTCTTTGCAGCAGCTTCAGTTTATGGACATTTCAGACAACCAGTTGTCAGGATTTATTCCTAAAGAAATCGGAGGGGAAGTTCCCATGAAAGGTGTTTTTACCAACTCTAGCCAGGTTGCTGTCCAAGGAAACGGCAAGCTCTGTAGTCTCAACATTGAAATTGCACATGAGTTGGGAATCTTCGACTGCATTGAAAATAAGAAAAGAAGATCAGTTTTACTCCCTATTACGCTTGCAGTTGTCGGCGCCACTGCTCTGATAGCTACGAGTAATTTTGCTGCAGAGAACTTGATAGGAAAGGGTGGCTTTGGCTATGTGTATAAGGTTGGAGATTTTGGATTAGCGAGGCTTCTTTCTCAGAATCCATCGCAGAGCAGCACACTGGGACTAAAGGGTTCAGTCGGCTATATTGCCCCACGAGGAAAAGCTTCAACTCGTGGGGACGTGTATACCTTTGGGATCCTATTGCTAGAGATGTTCATAGCGAGAAGACCAACCGATGAGATGTTCCATGACGGCTTAAGCTTAAACAAATTGGCTTCAAGCATGACAGAGAGTAATCAAGTCATGAAGGTGGTTGATCCGAGGCTTTTTAAGGATTATGATCATTCGAGAAACAGCTCATGGGCAAGTAAAGCAGAGGAATGCTTAGGAGGCGTGATAAGAATAGGGTTGTCATGCGCAGCTCGAGGGGCCAATGATCGTTTGAGCATGAGAGAGGCATCGACAAAACTGCAAGGAATCAAGCACTCTTTGCTGTCTCTGCACTTACTCGAAGCAGGTTTCACTCTGGGGGTTGCAGCCTCATGGGAAGCAGAAGCAGAAGCCACCTCAGGCTCAAAGGACATGAGAAATACAAGTATTACTGTAACTGCAACAAAGCGCATTAGTTTTGAGGAATTCATCTCTGACATTGAGAAATGA 2265 0.449 MNMKHIHLPLLLCFFLLLHLHGILCKKEASLNKDTDKDALLSFKSVISDPNKALSDWSSTSDSSHCNWHGVSCSKVGSRVQSLSLPGLGLSGKLPSSLSNLSYLHLLDLSNNSFHGQIPPQFSRLSLLNMLSLAFNNLSGTLPPQLGLLHRLQFLDLSINSLTGPLPRHFGNLSSLTGLFLARNHLLGKIPSELGNLCNLSHLHLFDNYFSGDFPFRIFNIYSLVFLSVTSNHLSGKLPQDIGHSLSNLKGLFLANNRFGGEISSSISNASQLHDLDLSNNEFHGWVPLFNNMNELTYLNLGRNHFSSTSLRNSQLFGSLGNSTQLQFLKLHNNRLAGELPSSAANLSSNLQHFCVAGNSLSGRIPLGMGKFRNLEFLTLESNFFTGEIPTDIGALHKLVQLVAYHNRLSGEIPNILGNFTQLSIFDLGYNQFAGNALHGPFPSEVNSLQQLQFMDISDNQLSGFIPKEIGGEVPMKGVFTNSSQVAVQGNGKLCSLNIEIAHELGIFDCIENKKRRSVLLPITLAVVGATALIATSNFAAENLIGKGGFGYVYKVGDFGLARLLSQNPSQSSTLGLKGSVGYIAPRGKASTRGDVYTFGILLLEMFIARRPTDEMFHDGLSLNKLASSMTESNQVMKVVDPRLFKDYDHSRNSSWASKAEECLGGVIRIGLSCAARGANDRLSMREASTKLQGIKHSLLSLHLLEAGFTLGVAASWEAEAEATSGSKDMRNTSITVTATKRISFEEFISDIEK 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1440 754 Gene3D Ribonuclease Inhibitor 183 289 IPR032675 -
Dere05g1440 754 Gene3D Transferase(Phosphotransferase) domain 1 534 702 - -
Dere05g1440 754 SUPERFAMILY L domain-like 243 470 - -
Dere05g1440 754 Pfam Protein tyrosine and serine/threonine kinase 551 619 IPR001245 GO:0004672|GO:0006468
Dere05g1440 754 SUPERFAMILY L domain-like 35 308 - -
Dere05g1440 754 Gene3D Ribonuclease Inhibitor 32 182 IPR032675 -
Dere05g1440 754 Gene3D Ribonuclease Inhibitor 290 504 IPR032675 -
Dere05g1440 754 SUPERFAMILY Protein kinase-like (PK-like) 555 688 IPR011009 -
Dere05g1440 754 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Dere05g1440 754 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 70 317 - -
Dere05g1440 754 ProSiteProfiles Protein kinase domain profile. 361 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1440 754 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 349 533 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1440 Dere-ChrDere05 23654711 23660184 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1440 556 701 Receptor kinase-like Gene Family AT5G20480 32.903 5.90e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere05g1440 PK_Tyr_Ser-Thr 4.4e-07 CL0016