Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1436 ATGCTTGCATTAGCAAGAAACAACTTCAGTGGTTTAATCCCAAGTACTTTGGGGAATTTAATATCATTGGAAACATTGGATTTATCTTCAAACAACCTCTCTGATTCCATCTCTGCAACTTTGGAAAAGCTCCAATATATGATGAAGTTGAATTTGTCTTTCAACCATTTGGAAGGGGAAGTTCCTATGAAAGGTGTTTTTACAAACTTTACTGGGGTTGCCCTCCAAGGAAACAACAAGCTCTGTAGTCCTAACAAGGAAAATGCTGAAAAATTAAGAATCTTTCTGTGTGTCAAAAGGAAAAAGAACACAGCATTCTTACTCCCTCTCATACTTGCTGTTATAGTGGCCTCTATTCTTTTCCTTTCCATTTTCTGCTTAGCATGGGTGAAATTTGGCCGAAAGAAGAAAAATAAGGGAGAGAAAACGATGAAGGTCCTCGACTTGAAACAAAGCAAAGCCTCTCGGAGTTTCAATTCAGAGTGTGAAGCTCTGAAGAATGTTAGGCATAGGAACCTCATGAAGCTTATCACTTCTTGCTCTGGCATTGATTATAAAGGAGATGATTTTAAGGCCCTGGTTATGCAATTCATGGCCAACGGTAATTTGGACATGTGGCTGTACCCCGTTGATGAAGAAGAATCAGGGTCCTCCCTGACATTCTTGCAAAGACTAAATATTGCTGTGGACGTTGCTAGTGCTATGGACTATTTGCACCATGACTGGTTGCCAACTGATGAGATTTTCAAGGAAGGTTTAAGCCTTAACAAGTTTGCTTCGGCCATAAATGAGAACCAAATACTGATGGTAGCTGATCCCAAGCTTTTCAACGATTCTGAGTGGTGGACACAAGGCTCAGGCACCGGTTATCCTAGTGATTGCATGAGTGGTGACATACATAGCCATAGTTTCACACTGACCCAGCGCAGGGCAGAGGAGGGTATAGCTGCTGTGACTAGAGTTGGGTTGTCTTGTGCTACTGAAGTGGCCAAAGATCACTTGACCATGAGAGAGGCCTCAACAAAATTGCAAGGAATTAGGCAGTCTATGCTGGCTTTATGA 1062 0.419 MLALARNNFSGLIPSTLGNLISLETLDLSSNNLSDSISATLEKLQYMMKLNLSFNHLEGEVPMKGVFTNFTGVALQGNNKLCSPNKENAEKLRIFLCVKRKKNTAFLLPLILAVIVASILFLSIFCLAWVKFGRKKKNKGEKTMKVLDLKQSKASRSFNSECEALKNVRHRNLMKLITSCSGIDYKGDDFKALVMQFMANGNLDMWLYPVDEEESGSSLTFLQRLNIAVDVASAMDYLHHDWLPTDEIFKEGLSLNKFASAINENQILMVADPKLFNDSEWWTQGSGTGYPSDCMSGDIHSHSFTLTQRRAEEGIAAVTRVGLSCATEVAKDHLTMREASTKLQGIRQSMLAL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1436 353 Pfam Leucine Rich Repeat 22 44 IPR001611 GO:0005515
Dere05g1436 353 Pfam Protein tyrosine and serine/threonine kinase 134 240 IPR001245 GO:0004672|GO:0006468
Dere05g1436 353 Gene3D Transferase(Phosphotransferase) domain 1 126 245 - -
Dere05g1436 353 ProSiteProfiles Leucine-rich repeat profile. 22 45 IPR001611 GO:0005515
Dere05g1436 353 PANTHER OS04G0122200 PROTEIN 2 243 - -
Dere05g1436 353 SUPERFAMILY Protein kinase-like (PK-like) 130 242 IPR011009 -
Dere05g1436 353 SUPERFAMILY L domain-like 2 84 - -
Dere05g1436 353 Gene3D Ribonuclease Inhibitor 1 92 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1436 Dere-ChrDere05 23624157 23625681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1436 2 81 Receptor kinase-like Gene Family AT3G47570 35.802 3.95e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere05g1436 PK_Tyr_Ser-Thr 2.9e-11 CL0016