Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1430 ATGGAGCAACTTCAGTACATTGACGTGTCTAACAATGTTATGATAAGATATATTCTCGAAGAAATAGATGGCTACGTAAGCTTGCTGTTGCTTGTATTAGCAAGAAACCACTTCAATGGTTCAATCCCAAGCACTCTGGGGAATTTAAAATTGTTGGAATCATTGGATTTATCATCAAACAACCTCTCTGGTTCCATCCCTGCAACTTTGGAAAAGCTCCAATATATAGAGAAGTTAAATTTGTCTTTCAACGATTTGGAAGGAGAAGTTCTTATTAAAGGTGTTTTTACAAACTTTACCGGGGTTGCTCTTCAAGGAAACAATAAGCTATGTAGTCCTAACAAGGAAAATGCTGAAAAATTAAGAATCTTTCTGTGTGTCAAAGGGAAAAAGAACACAACATTCTTACTCCCTCTCATACTTGCTGTTATAGTGGCCTCTATTCATTTCTTTTTCATTTTTTGCTTAGCATGGGTGAAATTTGGCCAAAAGAAGAAAAATAAAGGAGAGAAAATAAGTCTGTCAACTTCTCCTTTCAAGGGAATGCCTCGAAATATATCATTTTCTAATATTCAAGCTACCACAAACAATTTTGCATATGAAAACTTGATAGGAAATAGTAGGTTCAACTTTGTTTATAAGGATGTGTTCAAAATCAATCAATGTGAAACTACCCATATGGTGAAGGTCCTCAACTTGAAACAAAGCAAAGCCTCTCAGAGTTTCAATTCAGAGTGTGAAGCTCTGAAGAATGTTAGGCATAAGAACCTTGTGAAGCTTATCACCTTTTGCTCTAACATTGATTATAAAGGAGATGATTTTAAGGTCTTAGTTATGCAATTCTTGGCCAACGGTAATTTAAACACATGGCTATACCCCATTGATGAAGAAGGATCAGGGTCCTCTTTGACATTCTTGCAAAGACTAAATATTGCTATAGACATTGCTAGTGTTATGACTGTTTGCACCATGACTTTTGGGATTTTACCATTTGAGATGTTCGTAGGGAAAAATCCAATTGATGAGATATTCAAGGAAGGTTTAAGCCTTAACAAGTTTGCTTCAGCCATAAATGAGAACCAAATACTGATGGTAGGGGAGGGTATAGCTGTTATGATTACAGTTGGGTTGTCATGTGCTGCTGAAGTGGCCAAAGATTGCTTGACCATGAGAGAGGCCTCAACAAAATTGCAAGGAATTAGGTAG 1206 0.3648 MEQLQYIDVSNNVMIRYILEEIDGYVSLLLLVLARNHFNGSIPSTLGNLKLLESLDLSSNNLSGSIPATLEKLQYIEKLNLSFNDLEGEVLIKGVFTNFTGVALQGNNKLCSPNKENAEKLRIFLCVKGKKNTTFLLPLILAVIVASIHFFFIFCLAWVKFGQKKKNKGEKISLSTSPFKGMPRNISFSNIQATTNNFAYENLIGNSRFNFVYKDVFKINQCETTHMVKVLNLKQSKASQSFNSECEALKNVRHKNLVKLITFCSNIDYKGDDFKVLVMQFLANGNLNTWLYPIDEEGSGSSLTFLQRLNIAIDIASVMTVCTMTFGILPFEMFVGKNPIDEIFKEGLSLNKFASAINENQILMVGEGIAVMITVGLSCAAEVAKDCLTMREASTKLQGIR 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1430 401 PRINTS Leucine-rich repeat signature 73 86 - -
Dere05g1430 401 PRINTS Leucine-rich repeat signature 52 65 - -
Dere05g1430 401 Pfam Leucine Rich Repeat 52 73 IPR001611 GO:0005515
Dere05g1430 401 ProSiteProfiles Protein kinase domain profile. 198 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1430 401 Gene3D Phosphorylase Kinase; domain 1 179 281 - -
Dere05g1430 401 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 90 - -
Dere05g1430 401 PANTHER OS04G0122200 PROTEIN 1 318 - -
Dere05g1430 401 Pfam Protein tyrosine and serine/threonine kinase 201 320 IPR001245 GO:0004672|GO:0006468
Dere05g1430 401 Gene3D Ribonuclease Inhibitor 1 121 IPR032675 -
Dere05g1430 401 SUPERFAMILY L domain-like 3 114 - -
Dere05g1430 401 SUPERFAMILY Protein kinase-like (PK-like) 180 322 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1430 Dere-ChrDere05 23532666 23534293 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1430 1 90 Receptor kinase-like Gene Family AT3G47570 38.889 1.43e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere05g1430 PK_Tyr_Ser-Thr 8.8e-11 CL0016