Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1425 ATGAACATGAAGCATATTCATCTCCCATTGCTCCTTTGTTTCTTCCTACTCCTTCATCTTCATGGCATCCTCTGTAAGAAGGAAGCAAGTCTTAACAAAGACACCGACAAAGATGCTCTCTTATCATTCAAATCCGTCATCTCCGACCCAAACAAAGCTCTCTCTGACTGGTCGTCAACTTCAGATTCCTCTCACTGCAACTGGCATGGTGTATCCTGCTCCAAAGTTGGAAGCAGAGTCCAATCCCTTAGCCTGCCAGGACTTGGCCTCTCTGGGAAACTCCCCTCTTCTCTCTCCAACCTCTCTTATCTGCACTTGCTTGATCTCTCCAACAACTCATTTCACGGCCAAATTCCCCCACAGTTTAGCCGCCTTTCACTCCTCAATATGCTCTCGTTAGCTTTCAACAACCTCAGTGGAACGCTTCCACCACAATTGGGCCTTCTTCACCGGCTCCAATATCTGGACTTGTCTATCAACAGTCTCACTGGTCCACTCCCTCGACATTTCGGAAACCTCTCCTCCCTTACTGGTCTTTTCTTAGCAAGGAACCATCTTATTGGAAAAATTCCAAGTGAATTGGGTAATCTTCGTAATCTTTCTCATCTTCACCTCTTTGATAACTATTTCTCTGGGGATTTTCCTTTTCGTATCTTCAACACTTCTTCGCTAGTCTTCTTGTCTGTAACAAGCAATCACCTTTCGGGGAAGTTACCGCAGGATATTGGTCATTCTCTTCCAAACATCAAGGGCCTCTTTCTAGCAAACAATAGGTTCGGAGGAGAGATTTCTAGCTCCATATCCAATGCTTCGCAGCTCCATGATCTCGATCTGTCCAACAATGAGTTTCATGGGTGGGTTCCTCTGTTCAATAACATGAACGAACTTACCTCTCTGAATCTGGGCCGAAACCATTTCTCATCGACGACACTGCGTAATTCTCAGCTCTTCGGTTCCCTAGGAAACTCTAGGCAATTGCAATTTCTCAAACTCCATAACAATCGGTTAGCTGGAGAACTTCCAAGCTCTGCTGCGAATCTGTCGAGCAATCTCCAACATTTTTGTGTTGCTGGCAATTTGTTGAGCGGCAGAATCCCTCTGGGGATGGGGAAATTTCGAAACCTAGAGTTCCTGACTTTAGAAAATAATTTTTTCACTGGAGAGATACCCACGGACGTAGGAGCACTGCACAAACTGGTGCACCTCGTAGCATACCACAATAGGCTGTCCGGAGAAATTCCAAATATTTTAGGCAATTTTACGCAACTAAGTATACTTGACCTGGGTTATAATCAGTTTGCGGGTAAGATTCCTACGAGCGTTGGACATTGCAAGCAGTTGATTGTTCTTGTCCTTGGAATGAACAGGCTCCATGGGACCATACCCAATGAGATTTTTGAGCTTTCTATGCTAAATACCTTGTACTTACCAGGTAATGCCCTACACGGTCCATTTCCTTCCGAAGTCAACTCTCTGCAGCAGCTTCAGTTTATGGACATTTCAGACAACCAGTTGTCAGGATTTATTCCTAAAGAAATCGGAGGTTGTCGGGGCCTGCAATGGCTTAAAATGGCAAGAAACAACATCAGCGGGTTAATCCCGGATAGTTTGGGGAATTTGAGATCATTAGAGACTCTTGATCTATCCTCAAATAATCTCTCAGGCCAAATTCCAGAAAATCTAGAAAATCTTCAGTACATGGTGATGTTAAACTTGTCTTTTAATCATTTTGAAGGGGAAGTTCCCATGAAAGGTGTTTTTACCAACTCTAGCCAGGTTGCTCTCCAAGGAAACGGCAAGCTCTGTAGTCAGAACATTGAAATTGCACATGAGTTGGGAATCTTCGTCTGCATTGAAAATAAGAAAAGAAGATCACTTTTACTCCCTATTACGCTTGCAGTTGTCGGCGCCACTGCTCTGTTAGTCTCAATCCCCTACCTGATCTGGGTAGTGATGTCTCGGAGGAAGAAGAAAAGAAAGCAGAGGATAACGAGTTTGTCACCTGCTCATCCCAAGGGGGTACCTCAAACTGTATCTTATGGTGACATCAGGATAGCTACGAGTAATTTTGCAGCAGAGAACTTGATAGGAAAGGGTGGCTTTGGCTATGTGTATAAGGGTGTGTTCAACCTAAACGCAGGTGAAGCCACCCTTGCCGTCAAGCCTAGCAATGTCCTATTAGATGAAGATATGGTGGCCCATGTTGGAGATTTTGGATTAGCGAGGCTTCTTTCTCAGAATCCGTCGCAGAGCAGCACACTGGGACTAAAGGGTTCAATCGGCTACATTGCCCCAGGAGGAAAAGCTTCAACTCGTGGGGATGTGTATACCTTTGGGATCCTACTGCTAGAGATGTTCATAGCGAAAAGACCAACCGATGAGATGTTCCATGACGGCTTAAGCTTAAACAAATTGGCTTCAAGCATGACAGAGAGTAATCAAGTCATGAAGGTGGTTGATCCGAGGCTTTTTAAGGATTATGATCATTCGAGAAACAGCTCATGGGCAAGTAAAGCAGAGGAATGCTTAGGAGGCGTGATAAGAATAGGGTTATCATGCGCTGCTCGAGAGGCCAATGATCGTTTGAGCATGAGAGAGGCATCGACAAAACTGCAAGGAATCAGGCACTCTTTGCTGTCTCTGTGA 2646 0.4478 MNMKHIHLPLLLCFFLLLHLHGILCKKEASLNKDTDKDALLSFKSVISDPNKALSDWSSTSDSSHCNWHGVSCSKVGSRVQSLSLPGLGLSGKLPSSLSNLSYLHLLDLSNNSFHGQIPPQFSRLSLLNMLSLAFNNLSGTLPPQLGLLHRLQYLDLSINSLTGPLPRHFGNLSSLTGLFLARNHLIGKIPSELGNLRNLSHLHLFDNYFSGDFPFRIFNTSSLVFLSVTSNHLSGKLPQDIGHSLPNIKGLFLANNRFGGEISSSISNASQLHDLDLSNNEFHGWVPLFNNMNELTSLNLGRNHFSSTTLRNSQLFGSLGNSRQLQFLKLHNNRLAGELPSSAANLSSNLQHFCVAGNLLSGRIPLGMGKFRNLEFLTLENNFFTGEIPTDVGALHKLVHLVAYHNRLSGEIPNILGNFTQLSILDLGYNQFAGKIPTSVGHCKQLIVLVLGMNRLHGTIPNEIFELSMLNTLYLPGNALHGPFPSEVNSLQQLQFMDISDNQLSGFIPKEIGGCRGLQWLKMARNNISGLIPDSLGNLRSLETLDLSSNNLSGQIPENLENLQYMVMLNLSFNHFEGEVPMKGVFTNSSQVALQGNGKLCSQNIEIAHELGIFVCIENKKRRSLLLPITLAVVGATALLVSIPYLIWVVMSRRKKKRKQRITSLSPAHPKGVPQTVSYGDIRIATSNFAAENLIGKGGFGYVYKGVFNLNAGEATLAVKPSNVLLDEDMVAHVGDFGLARLLSQNPSQSSTLGLKGSIGYIAPGGKASTRGDVYTFGILLLEMFIAKRPTDEMFHDGLSLNKLASSMTESNQVMKVVDPRLFKDYDHSRNSSWASKAEECLGGVIRIGLSCAAREANDRLSMREASTKLQGIRHSLLSL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1425 881 Gene3D Ribonuclease Inhibitor 32 184 IPR032675 -
Dere05g1425 881 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 315 710 - -
Dere05g1425 881 ProSitePatterns Protein kinases ATP-binding region signature. 696 721 IPR017441 GO:0005524
Dere05g1425 881 Gene3D Transferase(Phosphotransferase) domain 1 717 879 - -
Dere05g1425 881 Gene3D Ribonuclease Inhibitor 185 289 IPR032675 -
Dere05g1425 881 SUPERFAMILY RNI-like 227 584 - -
Dere05g1425 881 SUPERFAMILY Protein kinase-like (PK-like) 677 875 IPR011009 -
Dere05g1425 881 ProSiteProfiles Leucine-rich repeat profile. 542 565 IPR001611 GO:0005515
Dere05g1425 881 Pfam Leucine rich repeat 151 209 IPR001611 GO:0005515
Dere05g1425 881 Pfam Leucine rich repeat 517 577 IPR001611 GO:0005515
Dere05g1425 881 SMART LRR_typ_2 540 564 IPR003591 -
Dere05g1425 881 SMART LRR_typ_2 125 149 IPR003591 -
Dere05g1425 881 SMART LRR_typ_2 492 516 IPR003591 -
Dere05g1425 881 SMART LRR_typ_2 372 396 IPR003591 -
Dere05g1425 881 SMART LRR_typ_2 293 319 IPR003591 -
Dere05g1425 881 SMART LRR_typ_2 420 444 IPR003591 -
Dere05g1425 881 SMART LRR_typ_2 173 197 IPR003591 -
Dere05g1425 881 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 70 315 - -
Dere05g1425 881 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Dere05g1425 881 ProSiteProfiles Protein kinase domain profile. 543 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1425 881 FunFam LRR receptor-like serine/threonine-protein kinase EFR 316 623 - -
Dere05g1425 881 SMART serkin_6 690 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1425 881 SMART LRR_sd22_2 348 377 - -
Dere05g1425 881 SMART LRR_sd22_2 149 175 - -
Dere05g1425 881 SMART LRR_sd22_2 540 563 - -
Dere05g1425 881 Gene3D Ribonuclease Inhibitor 290 611 IPR032675 -
Dere05g1425 881 PRINTS Leucine-rich repeat signature 152 165 - -
Dere05g1425 881 PRINTS Leucine-rich repeat signature 540 553 - -
Dere05g1425 881 Pfam Protein kinase domain 720 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1425 881 SUPERFAMILY L domain-like 35 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1425 Dere-ChrDere05 23350238 23353305 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1425 716 876 Receptor kinase-like Gene Family AT3G47570 40.588 1.44e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere05g1425 Pkinase 5e-10 CL0016