Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1420 ATGTCACAGCAAAGGCAAATTAGGATGATGAGTCCAAACAATGCAAAACAAGTTGGTGACACGACATATACCAAGATCTTTGTAGGAGGGTTGGCTTGGGAGACTAAAAGAGACTCTCTGAAACGCTATTTTGAGCAGTTTGGGGAGATCTTTGAGGCTGTTGTTATCACTGATAGAAACACTGGAAGATCAAAAGGCTATGGCTTTGTGACTTTCAAGGAGCCAGACTCAGCAATAAGAGCTTGTCAGAATCCCTATCCTATGATTGATGGAAGGAGGGCTAATTGCAATCTTGCAGCTCTTGGTGCACAGAAATTCAACCCTTCCACCGCAGCAGCAGGAAGTGAGAAATTCAACGCCGATTCATGGACTATGGTACCAATCCCACTTCAAGGCACCACCTCATATTATAACCAGCACATGCCCCACTACGCTTTTCCTTTTCCACCACCCTATAGGCACCCTGGTTATCCTCCTCCACAAGAAATCTATGCAATGAACTACTATAATGTTTATGGAGGGCAGCAGATTCCACTTCGTTGGCGTCCAGCATTTTACCAACCAATTTATGGGCTTAATCATTCCACCAGATTGCCAACAGAGCCATTAGGGAAGAAGACACAATACCCAGAAGCATCACCCCAGGAAATGTTCACAGTTGTGGGCTTACCAGAACCTGTTTCAGTTTCTTCTTCAGTACCCGCCACTGGTTCAGTATCTAGACCAGTCGCTGCAACAGTAGCTGCAGCAGCCAAAGTTGGATCCTCCCCTGAACACAAATCTTCAGCTTAG 792 0.4558 MSQQRQIRMMSPNNAKQVGDTTYTKIFVGGLAWETKRDSLKRYFEQFGEIFEAVVITDRNTGRSKGYGFVTFKEPDSAIRACQNPYPMIDGRRANCNLAALGAQKFNPSTAAAGSEKFNADSWTMVPIPLQGTTSYYNQHMPHYAFPFPPPYRHPGYPPPQEIYAMNYYNVYGGQQIPLRWRPAFYQPIYGLNHSTRLPTEPLGKKTQYPEASPQEMFTVVGLPEPVSVSSSVPATGSVSRPVAATVAAAAKVGSSPEHKSSA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1420 263 SMART rrm1_1 25 97 IPR000504 GO:0003723
Dere05g1420 263 SUPERFAMILY RNA-binding domain, RBD 5 99 IPR035979 GO:0003676
Dere05g1420 263 Gene3D - 1 114 IPR012677 -
Dere05g1420 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Dere05g1420 263 PANTHER BOULE-RELATED 14 225 - -
Dere05g1420 263 CDD RRM_RBM24_RBM38_like 24 99 - -
Dere05g1420 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1420 Dere-ChrDere05 23312282 23313620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1420 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 5.70e-16 75.5