Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1418 ATGCCAATGATTTCTATTGAAGGTGCTGAAATGGCTGCCGGCGAGTTGGCTTGTTCATACGCCTCCTTGATTCTCCATGACGACGGGATAGCAATCACCGCGGAGAAGATTAGTACATTAGTTAAAGCTGCCAATGTGACTGTGGAATCGTACTGGCCGAGCCTATTTGCGAAACTTGCTGAGAAGAGGAATATTGAGGATCTCATTTTGAATTCTGGTTCAGGCGGTGGTGCTGCCGTAGCTGTTGCCGCCCCTGCTGCTGGTGCCGGTGCTGGCGCTGGTGATGCCGCTGCAGCGCCCGCCGCCGAGGAAAAGAAGGAAGAAGCCAAGGAGGAGAGCGATGATGATATGGGGTTCAGCTTATCAGAAGAATGTATCTGTGACATTATGCTGGAACAAACAATACATGCTTGTGCCCCTTTGAAGAAAATGGTGGGAAGTTGGTTGTTGGCAGTCGATGAAGACCCTGATTTACATGCGGTAGCCCGTATTGTTGTCATGGAGTTTGAAGAATCTGGTTACCTGCCATCTAGCATAATCCGTGTTGTTGATAAGATTAAAAAAAATGACATTCCTTTGAAACTTACTTTCACAGAGCTGCAGCAGCTTCTCAAACAATATGGGAATCTCAATATGACAAGCGCTTGGACAAATATGAGCTTTGCAATCAAACATAGGGATATAGAGAGGGAGTGGGAGAATCAGGCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAGCTTGTGGAGCACGGCTCACTTCGAGGATTGCTCTCTTGATATGAGTGGTCGCTTTTCACGCACTATTTATGTTGGCAACCTGCCATCAGATATAAGAGAATCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATATTGGATATTGAGTTAAAGATTCCACCTCGCCCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCTGAAGATGCAATCCGCGGTCGTGATGGCTACAACTTTGATGGTTGTCGATTAAGGGTGGAGCTTGCGCATGGTGGTAGAGGGCCATCGTCAAGTGATCGCCGTGGCTATGGTGGTGGTGGTGGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGAGCCGTTTTGGTGTTTCACGCCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCATCTGCATCTTGGCAGGATTTAAAGGATCATATGCGGAAAGCTGGTGATGTATGTTTTGCTGAGGTTTCACGTGATAGTGAAGGTACATTTGGCATTGTTGATTACACTAACTATGACGACATGAAATATGCTATTCGGAAACTTGATGACACTGAGTTTAGAAATCCTTGGGCAAGAGCTTATATTCGGGTGAAGAAATATGAGGGCAGTCCCACAAGGAGCCGCAGCAGAAGCCCTGGCAGAAGTAGAAGCCCTAAAAGGATTAGGAGTAGGTCATTGGAGCGATCTGTCTCTAGGTCACCATCTAGATCTAGATCAGCATCACCAATCAAATCATCTAGGCCAAGATCACCATCCCGGTCCCGGTCCCGGTCACGGTCTCGGTCTCGGTCTCGGTCTCGGTCACAATCTGGATCACCACGCCAGGCACGATCAGCCAGTGGTTGA 1629 0.4782 MPMISIEGAEMAAGELACSYASLILHDDGIAITAEKISTLVKAANVTVESYWPSLFAKLAEKRNIEDLILNSGSGGGAAVAVAAPAAGAGAGAGDAAAAPAAEEKKEEAKEESDDDMGFSLSEECICDIMLEQTIHACAPLKKMVGSWLLAVDEDPDLHAVARIVVMEFEESGYLPSSIIRVVDKIKKNDIPLKLTFTELQQLLKQYGNLNMTSAWTNMSFAIKHRDIEREWENQALEHLGANEQWSLWSTAHFEDCSLDMSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGGGGGGGGSRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYEGSPTRSRSRSPGRSRSPKRIRSRSLERSVSRSPSRSRSASPIKSSRPRSPSRSRSRSRSRSRSRSRSQSGSPRQARSASG 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1418 542 MobiDBLite consensus disorder prediction 341 376 - -
Dere05g1418 542 Gene3D - 260 380 IPR012677 -
Dere05g1418 542 MobiDBLite consensus disorder prediction 493 510 - -
Dere05g1418 542 Gene3D - 11 73 IPR038716 -
Dere05g1418 542 Gene3D - 384 462 IPR012677 -
Dere05g1418 542 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 115 533 - -
Dere05g1418 542 SMART rrm1_1 386 455 IPR000504 GO:0003723
Dere05g1418 542 SMART rrm1_1 268 338 IPR000504 GO:0003723
Dere05g1418 542 FunFam serine/arginine-rich splicing factor SR34A-like 262 384 - -
Dere05g1418 542 MobiDBLite consensus disorder prediction 511 525 - -
Dere05g1418 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 385 463 IPR000504 GO:0003723
Dere05g1418 542 MobiDBLite consensus disorder prediction 461 542 - -
Dere05g1418 542 Hamap 50S ribosomal protein L12 [rpl12]. 16 123 IPR027534 GO:0003735|GO:0005840|GO:0006414
Dere05g1418 542 FunFam serine/arginine-rich splicing factor SR34A-like 385 462 - -
Dere05g1418 542 Pfam 60s Acidic ribosomal protein 32 121 - -
Dere05g1418 542 MobiDBLite consensus disorder prediction 526 542 - -
Dere05g1418 542 SUPERFAMILY RNA-binding domain, RBD 266 455 IPR035979 GO:0003676
Dere05g1418 542 CDD Ribosomal_P1 15 71 - -
Dere05g1418 542 CDD RRM1_SF2_plant_like 268 339 - -
Dere05g1418 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 342 IPR000504 GO:0003723
Dere05g1418 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 336 IPR000504 GO:0003723
Dere05g1418 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 387 449 IPR000504 GO:0003723
Dere05g1418 542 CDD RRM2_SF2_plant_like 385 460 - -
Dere05g1418 542 FunFam 60S acidic ribosomal protein P1 11 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1418 Dere-ChrDere05 23284432 23295394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1418 11 117 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 61.818 1.61e-35 127