Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1411 ATGGGTGAGGTGGTGTTGAGTGCTGGGAAGGTTCTGGAAGCGAAGGAGGCAGAGAGCAAGATCCACAAGCAGAAGGGCAGGTCAGAGGAGGAAGGGTACGGAACAGAGAGTAGAGGTGACGAATTGAATAATGGATTGATGAGGTGGGAGAAGTTCTTGCCCAAGATGATATTGAGGGTGCTATTGGTTGAAGCTGATGATTCCACCCGGCAGATTATAGCGGCGCTTCTCAGGAAATGCAGCTATAAAGTGGCTGCTGTTTCTGATGGCTTGAAGGCGTGGGAATTACTGAAGGGAAGACCACGTAACGTTGATCTTATATTGACAGAAGTTGATTTGCCATCAATATCTGGCTATGCTCTTCTCACATTAATTATGGAGCATGAAATTTGCAAAAATATTCCTGTCATAATGATGTCCTCACATGATTCGATTAGCACGGTTTACAAATGCATGTTGAGAGGTGCTGCTGACTACCTTGTTAAGCCGCTAAGAAAAAATGAGCTGAGGAATTTGTGGCAGCACGTTTGGAGAAGACAATCTTCAACCTCTGGTGTAAAAGATCCCCAAGATGAGAGTGTTGCACAACCAAAGGTTGAAGCCACTGCTGAAAACAATGCTCCTGGTAATTATTCAAGCGGTGATGCTGCGTGCATTCAAAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCTCAGAGCTCTTGTACAAAGCCTGAATTGGAAGCTGAGAGCGCTGCCGCCATGGATCATGATGTGGGTGAATCTCCCCAATTAAAGCATGGTGAAATACACCCGAATAAAACAAAGATGCAGGAGGTTGAAATGTGCATTCATTTGGGCCAGACATTGACCATGCATGATGGTCAGGCTGGAGGATTAACTGTTAGGATCTGCAAAAATGGTGAGGCAAATTCAGCTTATGGCAAGGATAATGATCCAGAAGATTTTAGGAGTCCTGATACCGGTGGGGAGGCTTGCAGTAATCACTATGTTCAAATTACCTCTTCGAAGGAAGCTATTGACTTGATTGGAGCATTTCAAAATCATCCAAATTGCAGTCACATTAGTTCCTCAGTTAATTGCACTGGCAAGTTTGACTTTTCTCCACAGCTGGATCTTTCCTTAAGAAGATGTCACCCCGGCAACTTTGAGAATGAAGTCACTGAAGAAAGGCATACCCTGATGCACTCTAATGCCTCAGCTTTTAAGCGGTATACTAGCAGGCAAAGACAAGCCCCACCTGCAGTGTTCATTAATTGCTGCGATCAAGAAAGAGAACAGGGAGCAAATTGTGAGAAGAATATCTCCAATATTATGGGCTATAACTCTGACAGTTCAACACCTAGTATGCAAAGATGCATTGTGTCACCAGCTACACCGCAGTCAAAAGAATCTGAACTCACAACTTCACCCTCTCGGCCTAGGCCTTCTATCCCAAGTCCAGTGAAAGTTATTAGGTACAGTGATCTATGCACAGCCTATGGTTCTGTACTTCCTCCAATGTTTTGTACACAATCAGCTCCTCCATCAACGCCAAGTCCAGGCTCGGTTCCACACCATGAGCCAACCCTTCAAGTGAATGCTTTTTATCAGTCAAATACCAAAGAAAGCAGTTCAGAGCAGCTTTCTGAGTCTCAAGGTCAAAACGGAAACATCACAACAAACCAGATTGTGTACATGAAGGAAAACAAATTAGAACATGTGGAGGATCCAAGACATATCTCCCCTACAACCGGTCAAAGTGCATGCAGTAACATCAATGTTGACCAAGTTGCTATTGTCAGGACAGCTACAGAGAGCAAGAATGCGGACGTCACAAATAATGGGAGTTCTCAACGATCTATCCAAAGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGAAAAGAGAGATGCTTTGAAAAGAAGGTGCGCTATGAAAGCAGAAAGAAACTTGCAGAGCAGCGTCCTAGAGTGAAGGGGCAGTTTGTTCGCCAAGTACAGCAGGATCTCCCAGCTGCAGAAAAAGAAGAAGACTATGATCATTAG 2031 0.4412 MGEVVLSAGKVLEAKEAESKIHKQKGRSEEEGYGTESRGDELNNGLMRWEKFLPKMILRVLLVEADDSTRQIIAALLRKCSYKVAAVSDGLKAWELLKGRPRNVDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSHDSISTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTSGVKDPQDESVAQPKVEATAENNAPGNYSSGDAACIQRNKELIEKGSDAQSSCTKPELEAESAAAMDHDVGESPQLKHGEIHPNKTKMQEVEMCIHLGQTLTMHDGQAGGLTVRICKNGEANSAYGKDNDPEDFRSPDTGGEACSNHYVQITSSKEAIDLIGAFQNHPNCSHISSSVNCTGKFDFSPQLDLSLRRCHPGNFENEVTEERHTLMHSNASAFKRYTSRQRQAPPAVFINCCDQEREQGANCEKNISNIMGYNSDSSTPSMQRCIVSPATPQSKESELTTSPSRPRPSIPSPVKVIRYSDLCTAYGSVLPPMFCTQSAPPSTPSPGSVPHHEPTLQVNAFYQSNTKESSSEQLSESQGQNGNITTNQIVYMKENKLEHVEDPRHISPTTGQSACSNINVDQVAIVRTATESKNADVTNNGSSQRSIQREAALNKFRLKRKERCFEKKVRYESRKKLAEQRPRVKGQFVRQVQQDLPAAEKEEDYDH 676
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1411 676 Pfam CCT motif 618 660 IPR010402 GO:0005515
Dere05g1411 676 MobiDBLite consensus disorder prediction 443 474 - -
Dere05g1411 676 ProSiteProfiles CCT domain profile. 618 660 IPR010402 GO:0005515
Dere05g1411 676 SUPERFAMILY CheY-like 58 185 IPR011006 -
Dere05g1411 676 ProSiteProfiles Response regulatory domain profile. 59 177 IPR001789 GO:0000160
Dere05g1411 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 59 261 IPR045279 GO:0009736
Dere05g1411 676 Gene3D - 56 283 - -
Dere05g1411 676 SMART REC_2 58 173 IPR001789 GO:0000160
Dere05g1411 676 MobiDBLite consensus disorder prediction 199 214 - -
Dere05g1411 676 Pfam Response regulator receiver domain 60 171 IPR001789 GO:0000160
Dere05g1411 676 MobiDBLite consensus disorder prediction 17 37 - -
Dere05g1411 676 MobiDBLite consensus disorder prediction 644 676 - -
Dere05g1411 676 MobiDBLite consensus disorder prediction 534 553 - -
Dere05g1411 676 CDD psREC_PRR 60 163 - -
Dere05g1411 676 MobiDBLite consensus disorder prediction 443 482 - -
Dere05g1411 676 MobiDBLite consensus disorder prediction 17 39 - -
Dere05g1411 676 MobiDBLite consensus disorder prediction 180 214 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere05g1411 Dere-ChrDere05 23159877 23164143 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1411 339 662 Response Regulator Gene Family AT5G24470 36.228 5.32e-34 135
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Dere05g1411 Response_reg 1.4e-21 CL0304