Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1401 ATGGATGCGACGCCGCTGCCGAAGAAGAGCCCGGCTGAGAATGGTGGCGGAGAGGAAGTGGGCGAACGGAGTAGTAAGAGGCCTAAGGTTGACGCTGCGAAGAGCGAGGAATTGAAGAGAGTGGCGGAGATTGTGTTGGCTTTGTCAACGATGGCCACGATGCGAGGTGGCAGCAAGCCGACCGATCCCGAGATTGAGCTGATGAAGGAGGCTCGCGCGAAGTTAGTAGAGCTGTGCCACGGCATTGCTCCCAAGGATATTGTGGCAAGGGAAGCTATAGGAACTGTGATTGAGGATCTCGGGTTGAATGGCAAGTTTAAAGACCGGAGGCTAGGGTTTCTAACTCCGAAGATGTCTATAGCTGAGAGGTTATCGCACACCAAGTGGCGGATAGAAGAATTGAAGAAGTTTTCTGCACATTCTGGTTCATATACATCTCAGCCATTGCAAGCAAGTATTAGTGGTGGAACAGTAGAAAACAGTGTGCCATCGCATAATGTTCGAATGTTTCCTTCAGATAAATCAGGCCACATGGCAATCTCTTCTTCTGGTACCCTAGCTTCTGTGGCTCATGTTTCTACGCCAACTTCCGCAGCTTTGCAATATCAATCAACAGGCAATCCTATTGTTTCTGGAGGAACAACTATCAGTCATTTGGGGAGAAATCCATCTTCCTTAGCATCGTCTAAAGTTGAACAAACACAATTCAAAGTTGATGGAGTGTCAAATGCATCTTATGTGCTGCAAGTACAAGCAAACCAACCTTTGGTGAATGCTCCAACTTGGTCAATACAGACCCAATCTGCCTCATTAGCTAGAACTGCACCAGAAGAAAAGATGCATGTTCATACTTCTGTCAAGGTTGAGGGAACAGGTGCTGTAACTGTGTCAAGTGCTGTTCCACAAATAGCAAGGGATCAGAGCTTTAGACCATTTATTACTCAAACAGCACCTGGAAATTTAGCTAACATGCACCAGCTGTCGCAGGGCATGAACATGGTTCAGCCTCCTTCACTACCTAACAGTCATGCTGAAATTGCAAGGTTGGTCCAGAAATTGCTAGAACCAAATCTTCCTGAGCATCCCACTTGGAATCCTCCGTCAAGGGATTATATGAATAAGGCTTTAACTTGCCAGATGTGTGAGCTCACTGCTAATGAGGTGGATACTGTACTTCTTTGTGATTCTTGTGAAAACGGATTTCACTTGAGGTGCCTGCAGCCATCAATCTTAAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGATGCTTGACAATAAGTGGGGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGATCCTCAAACACTCCATCAAAAGTTCCCTCAAATACAATAGGAATTCAACCATCTTTAGAGAAGAGAGTAGGAGTATCAGATCTACAAGTCAACACACAAAACTTAACAACAAACTGGAGCACTGTTGCAACTGCTACTGGCAACAACAATGTTGAGCCGCAATCTGTTACAAAGACCCCAGAAACAAAAGAAATACAAGGGGAGACCATTTCATCCAGCATTAAACATACGGATGAGAAGGCTAACCCTAACATTTCAATGACATCCTTTACTGCAGCTTCTAGTCCTTCTGTTGGCTTGCTAGGTGAAAGTGCTGCTCAACGAATAAAAGGTTCTGAGGCATCTACTTGTACAGTGAAGACTGCTGCTTCAGAACAAGAGATTTTCTCTAAATTACCTGAGTCAGTTGAATGTGACAATTTGCAGTTGTCACAAACTCTACAAGTTGGGCGGACAGTGTTACAAGCCAATGCTAAAGGATCATCAAGTAAATGCCTTGACAGTAGTTTGACACATAATGATCAAAAAGAATCTCATGGAGGAGAAATGTTGATATATGATGTCAAGCGTGATGACCAAGATGTTGCACTAGCAAATTCTGATATCAATCGTGATACTGATGGTAGACAGTTTGCTGCACTATCTTCAGATGGCTTACATTCTGTAGAATGGATTGGTGATGTTATACAACTTGTGGATGAGAAAATGTTTTACAATTCTTGTTCTGTTGATGGAGTAGCATATAGGCTGCAGGATCATGCCCTTTTCTCCTCCGGTGGAGGTAAATTAATACCTTATAAACTTCAGTCTATGTGGGAAGATAGCAAAACTGGTTGGAAGTGGATTAGCATGACAAAGTGCTACTTTCCTGGTGATTTACCTGGAAATATTGCTCATCCATGTATATCTGAAGTCAATGAGGTGATTGTTACCTGTTATTTATCTCTATATTCTTCCGACCCAGATAGCCTAGTCAAGATCCTAGTATACTTGTCTATCCTGGCTGAAGGGAATCGATGGAAATTGGAAGGAAAAAGAAAAGATTTAGCAACTAGTAGTGATAGCCAATCAACTAATATTGGTGAGAGCAATGATTGGAGAACACTGGGGTAA 2439 0.433 MDATPLPKKSPAENGGGEEVGERSSKRPKVDAAKSEELKRVAEIVLALSTMATMRGGSKPTDPEIELMKEARAKLVELCHGIAPKDIVAREAIGTVIEDLGLNGKFKDRRLGFLTPKMSIAERLSHTKWRIEELKKFSAHSGSYTSQPLQASISGGTVENSVPSHNVRMFPSDKSGHMAISSSGTLASVAHVSTPTSAALQYQSTGNPIVSGGTTISHLGRNPSSLASSKVEQTQFKVDGVSNASYVLQVQANQPLVNAPTWSIQTQSASLARTAPEEKMHVHTSVKVEGTGAVTVSSAVPQIARDQSFRPFITQTAPGNLANMHQLSQGMNMVQPPSLPNSHAEIARLVQKLLEPNLPEHPTWNPPSRDYMNKALTCQMCELTANEVDTVLLCDSCENGFHLRCLQPSILRGIPRGEWHCMRCLTISGGKPLPPKYGRVMRSSNTPSKVPSNTIGIQPSLEKRVGVSDLQVNTQNLTTNWSTVATATGNNNVEPQSVTKTPETKEIQGETISSSIKHTDEKANPNISMTSFTAASSPSVGLLGESAAQRIKGSEASTCTVKTAASEQEIFSKLPESVECDNLQLSQTLQVGRTVLQANAKGSSSKCLDSSLTHNDQKESHGGEMLIYDVKRDDQDVALANSDINRDTDGRQFAALSSDGLHSVEWIGDVIQLVDEKMFYNSCSVDGVAYRLQDHALFSSGGGKLIPYKLQSMWEDSKTGWKWISMTKCYFPGDLPGNIAHPCISEVNEVIVTCYLSLYSSDPDSLVKILVYLSILAEGNRWKLEGKRKDLATSSDSQSTNIGESNDWRTLG 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1401 812 ProSiteProfiles Zinc finger PHD-type profile. 375 427 IPR019787 -
Dere05g1401 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 443 IPR013083 -
Dere05g1401 812 MobiDBLite consensus disorder prediction 1 36 - -
Dere05g1401 812 Gene3D - 659 758 IPR043151 -
Dere05g1401 812 MobiDBLite consensus disorder prediction 15 36 - -
Dere05g1401 812 MobiDBLite consensus disorder prediction 793 812 - -
Dere05g1401 812 Pfam PHD-finger 378 425 IPR019787 -
Dere05g1401 812 ProSitePatterns Zinc finger PHD-type signature. 378 424 IPR019786 -
Dere05g1401 812 SMART PHD_3 377 425 IPR001965 -
Dere05g1401 812 MobiDBLite consensus disorder prediction 487 508 - -
Dere05g1401 812 SUPERFAMILY FYVE/PHD zinc finger 368 432 IPR011011 -
Dere05g1401 812 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1401 Dere-ChrDere05 22965097 22969771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1401 378 442 Core DNA Replication Machinery Family AT4G12620 36.486 1.70e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere05g1401 PHD 1.9e-08 CL0390