LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g1385	ATGAGGAGAGGCAGAGGAGCCGTGCCGGTCAAAACGGTGGATGCGGCGGCGGCAGCGGCGGTTGAATTCAACGGATCCGGGTCTAGGACGATTTTAAAAGAGCCGAGGTACCGGGGCGTGCGGAAGAGACCGTGGGGTAGATTCGCCGCTGAGATCAGAGACCCTGTGAAGAAAGCTCGCGTGTGGCTCGGCACCTTCGATTCCGCCGAAGAAGCGGCTCGAGCCTACGACGCCGCCGCTCTCGCCCTCCGTGGTCCCAAGGCCAAGACCAACTTCCCTCTCTCCCCTTCTTCTCTCTCACCCTTCTGTTACCACAACAACAACACGAACAACAACCCCAACGATCCGTTTTTAGATCACAGGTTGTACGCCACGAATGGCTTCCAGGAGCACCAGATTAATCCCCAGAGACCGACCTCCAGCGGGATGAGCAGCACCGTCGAGTCCTTCAGTGGCCCACGCCCTCCGTCGACAGCGCCTGTGACGACCACCGGCCGGAGATACCCCCGGACGCCACCAGTCGTGCCGGAGGACTGCCACAGCGACTGCGATTCCTCGTCATCGGTGGTTGACGACGACGGTGATATAGCGTCGTCGACGTTCCGTCCGCCGCTGCCCTTCGATCTTAATTTCCCACCGGTGGATGATGATCTACACTGCACCGATCTGTGCCTCTGA	678	0.6032	MRRGRGAVPVKTVDAAAAAAVEFNGSGSRTILKEPRYRGVRKRPWGRFAAEIRDPVKKARVWLGTFDSAEEAARAYDAAALALRGPKAKTNFPLSPSSLSPFCYHNNNTNNNPNDPFLDHRLYATNGFQEHQINPQRPTSSGMSSTVESFSGPRPPSTAPVTTTGRRYPRTPPVVPEDCHSDCDSSSSVVDDDGDIASSTFRPPLPFDLNFPPVDDDLHCTDLCL	225

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g1385	225	Pfam	AP2 domain	35	85	IPR001471	GO:0003700\|GO:0006355
	Dere05g1385	225	SMART	rav1_2	36	99	IPR001471	GO:0003700\|GO:0006355
	Dere05g1385	225	FunFam	Ethylene-responsive transcription factor 2	36	94	-	-
	Dere05g1385	225	CDD	AP2	35	95	IPR001471	GO:0003700\|GO:0006355
	Dere05g1385	225	MobiDBLite	consensus disorder prediction	132	205	-	-
	Dere05g1385	225	Gene3D	AP2/ERF domain	36	95	IPR036955	GO:0003700\|GO:0006355
	Dere05g1385	225	ProSiteProfiles	AP2/ERF domain profile.	36	93	IPR001471	GO:0003700\|GO:0006355
	Dere05g1385	225	PRINTS	Ethylene responsive element binding protein signature	37	48	IPR001471	GO:0003700\|GO:0006355
	Dere05g1385	225	PRINTS	Ethylene responsive element binding protein signature	59	75	IPR001471	GO:0003700\|GO:0006355
	Dere05g1385	225	MobiDBLite	consensus disorder prediction	132	165	-	-
	Dere05g1385	225	SUPERFAMILY	DNA-binding domain	36	95	IPR016177	GO:0003677
	Dere05g1385	225	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	28	194	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g1385	Dere-ChrDere05	22728645	22729322	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g1385	1	225	AP2-EREBP Transcription Factor Family	AT1G50640	64.286	7.66e-63	194

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere05g1385		AP2	3.7e-16	CL0081