Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1349 ATGAAGAATATTTGGGGTTCGCATCACCGCTGGGTCGTGTTTTGCATTGTTTGCCTCTCTTTTTCTCTGCTACTGGCAAGGGTTTCTTCAAGCTCTCCACCTACTCTACTCACTGATCATGGTAATACAGATTCACTTGCAGGAAGAACTTTGAGGCAGGAGCAGGGTGGCAATCATGGAATACATTGCTCTAGAGAAAGAAGTAGAGTAGCTTGGAAGATCAGTGAGGAGTATTTGACGCCTTTTGTGGAGAAAGAAGGATATCAAATCTCAAGAAGGTGTAGGCTTCACCCTGACAACGATCTATATAGAGACCAGGAACAACACAAGTTTCATATAGATATAAATGAATGGCAGTGTGGGTACTGCAAAAAGAGTTTTTATGAGGAGAAACATCTTGATCTGCATTTTGACAACAGACACTCCAATTTACTAAATCAGAGTCAAAGGTGTTTGGCAGATGTATGTGGTGCACTGCACTGTGACCAAATAATGAATTCTGGGTTAAAAAAATCAAAGTGCAATCCTGCTGCTGCTGCAAGGAATAAACATCTCTGTGAGAGCTTAGCTGATAGTTGTTTTCCGATTAGTGAGGGCCCTGCAGCAGGCCGACTTCATGAATTTTTCTTGCGACAATTCTGTGATGCACATACCTGCACTGGAAGTCAGAAGCCCTTCTCCAGAGGGCGCAGGAAGAAGATGAGTGTGCTCTACCTTGTTTTCTCCATTTTAATAGTGATGCTGCTTATACTTTTCTATCTCTACGTTTACTTATATCAGAGAGGGATAAAAAGGGGCACTCAAATGCTGAGGCGCATCTCACAGACCAGCCGAAAGAAAAAGCCCTCTTAG 852 0.4284 MKNIWGSHHRWVVFCIVCLSFSLLLARVSSSSPPTLLTDHGNTDSLAGRTLRQEQGGNHGIHCSRERSRVAWKISEEYLTPFVEKEGYQISRRCRLHPDNDLYRDQEQHKFHIDINEWQCGYCKKSFYEEKHLDLHFDNRHSNLLNQSQRCLADVCGALHCDQIMNSGLKKSKCNPAAAARNKHLCESLADSCFPISEGPAAGRLHEFFLRQFCDAHTCTGSQKPFSRGRRKKMSVLYLVFSILIVMLLILFYLYVYLYQRGIKRGTQMLRRISQTSRKKKPS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1349 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 143 IPR013087 -
Dere05g1349 283 PANTHER ZINC FINGER PROTEIN-RELATED 21 282 - -
Dere05g1349 283 ProSitePatterns Zinc finger C2H2 type domain signature. 120 141 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1349 Dere-ChrDere05 22129167 22132560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1349 61 283 C2H2 Transcription Factor Family AT5G63280 66.518 3.99e-106 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere05g1349 None None None