Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1342 ATGGCGACAAATATAGAGGCGGCGAAAGACGAAAGCTTGCCCCTTGGAATGACCGACGAAGGTGGAGGAAGTGGAAATGGAAATGGAAATGCGAACGGGAATGGAGGTGTTGTCAGCGATGGCGTCACCAGCGGAGGCACAGTGGAGGAGGTGGCTTTAAAGAAAGGTCCGTGGACGGCGGCGGAGGATGCAGTTCTTATAGAATATGTGACGAAGCACGGCGAAGGAAACTGGAATGCGGTGCAGAGGAACACAGGACTGGCTCGCTGTGGCAAGAGCTGTAGGCTGAGATGGGCGAACCATTTGCGGCCCAATTTGAAGAAGGGTGCTTTCTCTCCCGAGGAAGAGAAGCTCATCCTGGAGCTCCATGCTCAGTTTGGCAACAAATGGGCTCGTATGGCTGCTCTGTTACCTGGGCGAACAGACAACGAAATCAAGAACTATTGGAACACGAGGGTGAAACGCCGTCAACGACAGGGCCTGCCTCTTTACTCCGATGACCATGATCGTCCCACCACCTCTTCCGCACCCGTCGCTCCTCCTCCTGCTGCTACACAATTCGAGTTTCTTCATCACCGTCACACTCTGTCTTCTCCAACTCCACCTCCTCATTCTCCTCTTTCTTCACCGCTCCAACCTAAACCCACATTGTCTTCTCTTCCTGACACTATGGTTCCTATGTCATCTTCTGCTGCCTCTCTTCCCTTCATCTTTAACCGACCCGCTCCACTTCTCTGTAACCCAGTTGGGTTCAAGCGTTTCCGCACTTCCTCTGGTTATCCCCTCCATATCCCTCCTACTATCCCAACCTCTGGTTCACTCCCAGAACAGCCCGTGACGACGACCCAGTTCGGCGTGTATGCTGGATTCGGGTTTCCGGGACAACTCAATTCCGGTTCGTCTCAGATTTATCAAACCCCTTCGTTGGAGTCAGACCGAGGAGGGTTTTTGAACCAATTTGCAAATTTCTCCACGAAATTGGAGCTCCCTTCGAACCAATTTTCCCAAACACATATTATAGAGCCTGAGATTACGTTTGACATGCAAATGAACGACCCTGCTACTTTGAAGACCAATGGTTGTAATGGGTTTCTTGGGGATCCTCTCTTTGAAGCTCAGGCATTGGCATCTGGCCAGACGGCATCGAAGAAGCGAAATTATTTGAGTTTAAATGAAGGAAATGATATTTTTGATGGATATCGAGGCTTGGATGATTTGCCTCTTACCTCTGCATACTGGTCTTCTTCTGCAGGACTGAAACTGAAGGAAGAAGCAACAGACCTGAGTAAATCCATGAACGATGACTTATCTTCGCTGCTTTCTGTTATGCCCTCTAGTATGTCGCTTCCGGATTGGCATACTGGCAATGCAGCAGAAGTCTCTAATGTTCAATCTTCTGGTGTCATGCCAGATGATAATTCTGGACTTGACATCAAGCCCATAGCTTCATTGTTTCCCATGACTTCCACAACAAACCATAATGACAATTCTGCATGCTACTCTTGGGACAATTTACCAGGACTCTGCTGA 1530 0.4922 MATNIEAAKDESLPLGMTDEGGGSGNGNGNANGNGGVVSDGVTSGGTVEEVALKKGPWTAAEDAVLIEYVTKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGAFSPEEEKLILELHAQFGNKWARMAALLPGRTDNEIKNYWNTRVKRRQRQGLPLYSDDHDRPTTSSAPVAPPPAATQFEFLHHRHTLSSPTPPPHSPLSSPLQPKPTLSSLPDTMVPMSSSAASLPFIFNRPAPLLCNPVGFKRFRTSSGYPLHIPPTIPTSGSLPEQPVTTTQFGVYAGFGFPGQLNSGSSQIYQTPSLESDRGGFLNQFANFSTKLELPSNQFSQTHIIEPEITFDMQMNDPATLKTNGCNGFLGDPLFEAQALASGQTASKKRNYLSLNEGNDIFDGYRGLDDLPLTSAYWSSSAGLKLKEEATDLSKSMNDDLSSLLSVMPSSMSLPDWHTGNAAEVSNVQSSGVMPDDNSGLDIKPIASLFPMTSTTNHNDNSACYSWDNLPGLC 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1342 509 Pfam Myb-like DNA-binding domain 55 102 IPR001005 -
Dere05g1342 509 Pfam Myb-like DNA-binding domain 108 151 IPR001005 -
Dere05g1342 509 ProSiteProfiles Myb-like domain profile. 50 102 IPR001005 -
Dere05g1342 509 MobiDBLite consensus disorder prediction 194 220 - -
Dere05g1342 509 ProSiteProfiles Myb-like domain profile. 103 153 IPR001005 -
Dere05g1342 509 SMART sant 107 155 IPR001005 -
Dere05g1342 509 SMART sant 54 104 IPR001005 -
Dere05g1342 509 MobiDBLite consensus disorder prediction 1 41 - -
Dere05g1342 509 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 31 468 - -
Dere05g1342 509 FunFam MYB-related transcription factor 54 107 - -
Dere05g1342 509 MobiDBLite consensus disorder prediction 159 182 - -
Dere05g1342 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 102 IPR017930 -
Dere05g1342 509 MobiDBLite consensus disorder prediction 23 41 - -
Dere05g1342 509 Gene3D - 110 156 - -
Dere05g1342 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 157 IPR017930 -
Dere05g1342 509 FunFam Transcription factor GAMYB 110 156 - -
Dere05g1342 509 SUPERFAMILY Homeodomain-like 53 149 IPR009057 -
Dere05g1342 509 CDD SANT 57 102 IPR001005 -
Dere05g1342 509 CDD SANT 110 151 IPR001005 -
Dere05g1342 509 Gene3D - 54 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1342 Dere-ChrDere05 21989318 21991802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1342 35 509 MYB Transcription Factor Family AT4G26930 36.420 2.28e-69 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1342 Myb_DNA-binding 1.3e-12 CL0123