Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere05g1341 | ATGCCCTTAGCTCAAGATCCGTTCTACGTTGTGAAGGAAGAGATTCAAGATTCTATCGGTAAGTTACAATCTACTTTTCACCAATGGCAAAGTACTTCTTCTGATGCTGGAGAGCGAGTGAATCTTTCAAAGGAGCTGGTTGCTAGTTGCGAAAGCATTGAGTGGCAGGTAGATGAATTGGACAAAGCAATTGCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATGAAACAGAGCTTGAAAATCGAAGGAGATGGACCAGCAATGCTCGTACCCAGGTGGGCACAGTGAAGAAATCAGTGGATGCTGGAAAGGGGTCAAACATGGCAAGCCGTGATAATGTAGCAATGCACCGGGAACTGATGAGGCTCCCAAATTCCCATCAAATTGATTCATCCAACCAGTATTCGCAGGATAATGATGATTTTATATCATCAGAATCAGATAGACAGCTGCTTCTAATAAAGCAACAAGATGAGGAGTTGGATGAGCTTAGTGCAAGTGTACAAAGAATTGGAGGTGTTGGGCTCACAATACATGAAGAACTCCTTGCACAGGAAAAGATTGTAGATGAACTGGGTGCTGAAATGGACAGTACATCAAACCGTCTAGATTTTGTTCAAAAAAAAGTGGCAATGGTCATGAAGAAGGCTGGTACGAAGGGCCAGATCATGATGATATTGGCCTTGGTGGTTCTGTTTATTTTCCTCTTTATTTTGGTATTCTTCACCTAG | 738 | 0.4282 | MPLAQDPFYVVKEEIQDSIGKLQSTFHQWQSTSSDAGERVNLSKELVASCESIEWQVDELDKAIAVAARDPSWYGIDETELENRRRWTSNARTQVGTVKKSVDAGKGSNMASRDNVAMHRELMRLPNSHQIDSSNQYSQDNDDFISSESDRQLLLIKQQDEELDELSASVQRIGGVGLTIHEELLAQEKIVDELGAEMDSTSNRLDFVQKKVAMVMKKAGTKGQIMMILALVVLFIFLFILVFFT | 245 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere05g1341 | 245 | CDD | SNARE_NTD_AtSYP61-like | 5 | 102 | - | - | |
| Dere05g1341 | 245 | PANTHER | SYNTAXIN | 28 | 237 | IPR045242 | - | |
| Dere05g1341 | 245 | Gene3D | - | 160 | 224 | - | - | |
| Dere05g1341 | 245 | Pfam | SNARE domain | 190 | 241 | IPR000727 | - | |
| Dere05g1341 | 245 | CDD | SNARE_Qc | 156 | 213 | - | - | |
| Dere05g1341 | 245 | Gene3D | - | 3 | 105 | - | - | |
| Dere05g1341 | 245 | SUPERFAMILY | t-snare proteins | 5 | 102 | IPR010989 | GO:0016020|GO:0016192 | |
| Dere05g1341 | 245 | Coils | Coil | 191 | 211 | - | - | |
| Dere05g1341 | 245 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 153 | 215 | IPR000727 | - | |
| Dere05g1341 | 245 | SMART | tSNARE_6 | 148 | 215 | IPR000727 | - | |
| Dere05g1341 | 245 | FunFam | Syntaxin 10 | 3 | 105 | - | - | |
| Dere05g1341 | 245 | Pfam | Syntaxin 6, N-terminal | 6 | 99 | IPR015260 | GO:0016020|GO:0048193 | |
| Dere05g1341 | 245 | FunFam | syntaxin-61 isoform X1 | 156 | 217 | - | - | |
| Dere05g1341 | 245 | SUPERFAMILY | SNARE fusion complex | 152 | 215 | - | - | |
| Dere05g1341 | 245 | ProSitePatterns | Syntaxin / epimorphin family signature. | 159 | 198 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere05g1341 | 56 | 245 | SNARE and Associated Proteins | AT1G28490 | 70.681 | 4.27e-92 | 268 |