Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1334 ATGTTCTCCTTCACTGTCACCAATGGCATTTCTGCAAAATCTTCACTTTCTAGCTCAATTTCTCTCTCTCTCCAACCGAATCAAACGATATTTATTCATTTTTCTACCACACTATCCCCGAAGAACCCCTCGCGATCTTTGTTTTACACCCCCATCCACTGCGGCCTACGCGAATTCCGAGGGCGAATTGAAACCGTAAAGAGCACGAAGAAAATCACCGAAGCCATGAAGCTTGTTGCGGCGGCTAGGGTTCGACGAGCACAAGAAGCCGTCATCAATGGGCGTCCCTTCTCGGAGACCCTTGTCGAATTCTTGTTCGACATCAACGAGCGACTGCAATCAGATGACATAGATGTTCCTTTGACCAACGTTCGACCTGTTAAGAAAGTCGCTCTTGTCGTCATAACAGGCGATCGAGGTCTCTGCGGTGGTTTCAACAACGCAGTCACCAAAAAAGCCGAGACCCGAATCGAAGAATTAAGGAAACTCGGATTGGATTACACAATAATCAGTGTTGGCAAGAAGGGAAATTCGTATTTCAGACGCCGGAATAATATTCCAGTTGATAGATTCATCGAAGCAGGGGGTTTTCCCACTGCGAAAGAAGCTCAAGCTATTGCAGATGATGTTTTTTCACTGTTTGTTAGTGAAGAAGTTGATAAGGTTGAGCTTGTGTACACTAAGTTTGTGTCATTAGTTAAGTCTGACCCAGTCATTCAGACATTGCTTCCTTTGTCACTGAAAGGAGAAGTTCGTGATGTGAATGGGAATTGTGTTGACGCCATGCATGATGAATTCTTCAGGCTGACAAGCAAGGAGGGAAAATTGGCTGTGGAGAGGGAAAGTGGGAGGAAAAAGAGAAGAGAGTCGCTATCACCCCTTATGCAATTTGAGCAGGACCCGGTTCAGATTCTTGATGCTATGATGCCTCTGTATTTGAATAGTCAAATTCTGAGGGCTTTGCAGGAGTCCCTAGCAAGTGAGCTGGCTGCAAGAATGGCTGCCATGTCTAATGCCACTGATAATGCAGATGAGCTGGAGAAGAATCTTTCAATTGCCTACAATCGGGACCGTCAGGCGAAGATTACAGGGGAGATATTGGAGATCGTCGCTGGAGCTGAAGCGCTAACACAATTTGATTGA 1143 0.4576 MFSFTVTNGISAKSSLSSSISLSLQPNQTIFIHFSTTLSPKNPSRSLFYTPIHCGLREFRGRIETVKSTKKITEAMKLVAAARVRRAQEAVINGRPFSETLVEFLFDINERLQSDDIDVPLTNVRPVKKVALVVITGDRGLCGGFNNAVTKKAETRIEELRKLGLDYTIISVGKKGNSYFRRRNNIPVDRFIEAGGFPTAKEAQAIADDVFSLFVSEEVDKVELVYTKFVSLVKSDPVIQTLLPLSLKGEVRDVNGNCVDAMHDEFFRLTSKEGKLAVERESGRKKRRESLSPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELAARMAAMSNATDNADELEKNLSIAYNRDRQAKITGEILEIVAGAEALTQFD 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1334 380 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 376 IPR035968 GO:0015986|GO:0045261|GO:0046933
Dere05g1334 380 CDD F1-ATPase_gamma 56 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Dere05g1334 380 Coils Coil 329 356 - -
Dere05g1334 380 NCBIfam ATP synthase F1 subunit gamma 55 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
Dere05g1334 380 Pfam ATP synthase 56 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
Dere05g1334 380 PANTHER ATP SYNTHASE GAMMA CHAIN 11 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
Dere05g1334 380 Hamap ATP synthase gamma chain [atpG]. 53 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
Dere05g1334 380 Gene3D - 122 246 - -
Dere05g1334 380 FunFam ATP synthase gamma chain, chloroplastic 272 376 - -
Dere05g1334 380 ProSitePatterns ATP synthase gamma subunit signature. 362 375 IPR023632 -
Dere05g1334 380 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986|GO:0045261|GO:0046933
Dere05g1334 380 PRINTS ATP synthase gamma subunit signature 354 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Dere05g1334 380 PRINTS ATP synthase gamma subunit signature 323 342 IPR000131 GO:0015986|GO:0045261|GO:0046933
Dere05g1334 380 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986|GO:0045261|GO:0046933
Dere05g1334 380 FunFam ATP synthase gamma chain, chloroplastic 123 246 - -
Dere05g1334 380 FunFam ATP synthase gamma chain, chloroplastic 54 121 - -
Dere05g1334 380 Gene3D ATP synthase, gamma subunit, helix hairpin domain 273 376 - -
Dere05g1334 380 Gene3D ATP synthase, gamma subunit, helix hairpin domain 54 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1334 Dere-ChrDere05 21941954 21943096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1334 23 376 Primary Pumps ATPases AT1G15700 71.831 5.62e-178 498