Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1326 ATGGGTTGCTGTGTGTCGAAAAGACAGCGTTCAGAGCCTGAATATAACGGTTTCAGATCAGTTGGGCCTCCAGGAGTTCACAATCAGAATCAGAAGATCCATGAACCCTACCATATACCTCCAAAACCCACCGCTACTACGGCGGCGCAGTCGCCATGGAAGCCCTCTGTTCCAGCTCCAAGCCCAAAGCCGGTTCATAAGTCAGATACGATTTTGGGAAAGCCGTTTGAGGATGTCAAACAGTATTATGCAATTGGGAAAGAACTGGGTCGAGGCCAATTTGGGGTTACCTACCTGTGCACTGAAAATTCAACTGGTCGGCAATACGCCTGCAAGTCAATTTCGAAGCGGAAGCTCGTGAGCAAAGCTGATAAAGAGGATATAAAGAGGGAGATTCAGATTATGCAGCACTTGAGTGGACAGCCCAACATTGTTGAGTTCAAAGGTGCTTATGAAGATAAGCAATCGGTTCATGTTGTGATGGAGCTATGTGCGGGTGGTGAGCTCTTTGATCGGATTATTGCCAAGGGGCATTATACTGAAAGGGCTGCTGCTTCAATTTGTAGACAGATTGTTAATGTTGTTCACATCTGCCATTTTATGGGTGTGATGCATAGGGATCTGAAGCCTGAGAATTTCTTGTTATCCAGTAAGGATCAAAATGCACTGCTAAAAGCTACAGATTTTGGCCTGTCGGTTTTCATCGAAGAAGGAAAGGTGTACCGGGATATTGTTGGAAGTGCTTATTATGTTGCTCCAGAAGTTCTACGGCGCAGATATGGAAAGGAAATAGATATATGGAGTGCAGGAGTTATGTTGTATATCTTAATTAGTGGTGTACCTCCATTTTGGGCTGAAACGGAAAAGGGAATATTTGATGCCATATTGCAAGGTCATATTGATTTTGAAAGTCAACCATGGCCAAGCATATCGAACAGTGCCAAGGACCTTGTTAGTAAGATGCTCATACAGGACCCAAAGAAGCGAATTACTTCTGCTCAAGTTCTGGAGCACCCATGGATTAGAGAAGATGGAAATGCTTCTGATAAACCAATTGACAGTGCAGTCCTCTCGAGGATGAAGCAATTCAGAGCAATGAATAAATTAAAGAAACTTGCCCTGAAGGTCATTGCGGAAAATCTCTCAAAAGAAGAGATCCAAGGGTTGAAGGCAATGTTTACAAATATGGACACTGACAAAAGCGGTACAATCACCTATGAGGAACTAAAGGCGGGATTGCAAAAACTTGGCTCAAAGCTCACAGAGGCTGAAGTGCAGCAGCTTATGGAAGCTGCAGATGTAGATGGAAATGGCACTATTGACTACATAGAATTCATCACTGCAACGATGCATAGACACAAGCTTGAAAAAGACGAGCATCTTTACAAGGCCTTCCAGTATTTCGATAAAGATAACAGTGGGTTTATTACAAGAGATGAACTTGAAACGGCCATGAAGGAATATGGAATAGCTGATGATGACACAATTAGGGAAATTTTATCAGAAGTTGATACAGATAATGATGGTAGAATCAACTATGATGAGTTCTGTGCAATGATGAGGAGTGGAAGCACCCAACCAGGCAAATTATTCTAA 1596 0.4286 MGCCVSKRQRSEPEYNGFRSVGPPGVHNQNQKIHEPYHIPPKPTATTAAQSPWKPSVPAPSPKPVHKSDTILGKPFEDVKQYYAIGKELGRGQFGVTYLCTENSTGRQYACKSISKRKLVSKADKEDIKREIQIMQHLSGQPNIVEFKGAYEDKQSVHVVMELCAGGELFDRIIAKGHYTERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDQNALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVMLYILISGVPPFWAETEKGIFDAILQGHIDFESQPWPSISNSAKDLVSKMLIQDPKKRITSAQVLEHPWIREDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSKEEIQGLKAMFTNMDTDKSGTITYEELKAGLQKLGSKLTEAEVQQLMEAADVDGNGTIDYIEFITATMHRHKLEKDEHLYKAFQYFDKDNSGFITRDELETAMKEYGIADDDTIREILSEVDTDNDGRINYDEFCAMMRSGSTQPGKLF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1326 531 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Dere05g1326 531 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Dere05g1326 531 PANTHER SERINE/THREONINE-PROTEIN KINASE 78 516 - -
Dere05g1326 531 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Dere05g1326 531 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Dere05g1326 531 FunFam Calcium-dependent protein kinase 1 349 524 - -
Dere05g1326 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Dere05g1326 531 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Dere05g1326 531 Pfam Protein kinase domain 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1326 531 Gene3D Transferase(Phosphotransferase) domain 1 169 349 - -
Dere05g1326 531 Coils Coil 406 426 - -
Dere05g1326 531 CDD STKc_CAMK 83 340 - -
Dere05g1326 531 ProSiteProfiles Protein kinase domain profile. 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1326 531 ProSiteProfiles EF-hand calcium-binding domain profile. 492 526 IPR002048 GO:0005509
Dere05g1326 531 SUPERFAMILY Protein kinase-like (PK-like) 82 348 IPR011009 -
Dere05g1326 531 SMART efh_1 388 416 IPR002048 GO:0005509
Dere05g1326 531 SMART efh_1 460 488 IPR002048 GO:0005509
Dere05g1326 531 SMART efh_1 495 523 IPR002048 GO:0005509
Dere05g1326 531 SMART efh_1 424 452 IPR002048 GO:0005509
Dere05g1326 531 FunFam calcium-dependent protein kinase 1 169 348 - -
Dere05g1326 531 Pfam EF-hand domain pair 459 521 IPR002048 GO:0005509
Dere05g1326 531 Pfam EF-hand domain pair 389 449 IPR002048 GO:0005509
Dere05g1326 531 Gene3D Phosphorylase Kinase; domain 1 85 168 - -
Dere05g1326 531 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Dere05g1326 531 SMART serkin_6 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1326 531 FunFam Calcium-dependent protein kinase 1 85 168 - -
Dere05g1326 531 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Dere05g1326 531 MobiDBLite consensus disorder prediction 1 70 - -
Dere05g1326 531 Gene3D - 350 523 - -
Dere05g1326 531 SUPERFAMILY EF-hand 380 521 IPR011992 -
Dere05g1326 531 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1326 Dere-ChrDere05 21790741 21795128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1326 1 526 EF-hand Containing Proteins AT3G20410 75.888 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere05g1326 Pkinase 3.1e-75 CL0016