Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1317 ATGATTGTGCATAATAAGATTCCAAAGGTCTTTGAAAAGTTATATAGAGAGAAGTGGGGGCCGGAAAATGGGGTAGGCAGCATCATCATATCCCCTACAAGAGAATTAGCTGGTCAACTGTTTGATGTTTTAAAATGTGTTGGTAAGCACCACAATTTTAGTGCTGGTCTCCTGATTGGTGGTCGCAAGGATGTTGTCATGGAGAAGCAACGCGTAAATGAGCTGAACATTTTAATCTGCACGCCAGGTCGGCTTCTACGACACATGGATGAAACTCCAAACTTTGATTGTTCACAGATTCAGGTGTTGGTACTAGATGAGGCAGATTGTATTCTTGACCGTGGATTTAAGAAGGAACTGAATGCAATCATCTCATATCTTCCTAAGCATAGACAAACCCTGCTTTACTCTGCAACTCAAACAAAGTCTGTTCAAGATCTTGCGAGACTAAGTTTAAAGGAGCCAGAGTATCGGAGCGTCCATGAAGAGTCTTTGACTGCCACTCCTACTCTCTTAAGACAGCTTGTGATGATTGTTCCTTTAGACCAAAAGTTAGACATGTTGTGGAGTTTCATAAAGTCACATCTTAACTCCAAAACACTTGTCTTTCTTTCCAGCTGTATACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCCTTAAAGTGCCTTCATGGGAGGATGAAGCAGGAGAGAAGGATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCCACTGACGTGGCTGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTCCAGGTTGATTGTCCTAAAAGTGTAGCATCTTACATACACAGAGTTGGTCGTACTGCTCGCTATAATTCAGGCGGGAGGTCAGTTTTATTTCTGATGCCTTCAGAGACTAAAATGCTTGAAAGATTAGAAGCAGCCAAAGTTCCAGTACATCTTAATAAGCCTGTCTTTGAGATCATCCCTATAATTGTCTGCATGTGGGTGGTTTCCGGTGGAGATTTTTTTGGATTAGGTCAATGTGGGGAGTGGTGGTCATCATGGTATGGTTACATCTTGGGTACAGTGGTGGGGAAAGGCAAAAGCAATGTGAACGGTGATGTTGGAGATTTTCTTGTGATGGTGCTGAGGATTGGAGTTTAG 1173 0.4237 MIVHNKIPKVFEKLYREKWGPENGVGSIIISPTRELAGQLFDVLKCVGKHHNFSAGLLIGGRKDVVMEKQRVNELNILICTPGRLLRHMDETPNFDCSQIQVLVLDEADCILDRGFKKELNAIISYLPKHRQTLLYSATQTKSVQDLARLSLKEPEYRSVHEESLTATPTLLRQLVMIVPLDQKLDMLWSFIKSHLNSKTLVFLSSCIQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPKSVASYIHRVGRTARYNSGGRSVLFLMPSETKMLERLEAAKVPVHLNKPVFEIIPIIVCMWVVSGGDFFGLGQCGEWWSSWYGYILGTVVGKGKSNVNGDVGDFLVMVLRIGV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1317 390 SMART helicmild6 211 294 IPR001650 -
Dere05g1317 390 SMART ultradead3 1 175 IPR014001 -
Dere05g1317 390 Gene3D - 9 164 IPR027417 -
Dere05g1317 390 Pfam Helicase conserved C-terminal domain 184 294 IPR001650 -
Dere05g1317 390 Pfam DEAD/DEAH box helicase 11 147 IPR011545 GO:0003676|GO:0005524
Dere05g1317 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 314 IPR027417 -
Dere05g1317 390 CDD SF2_C_DEAD 172 303 - -
Dere05g1317 390 Gene3D - 170 331 IPR027417 -
Dere05g1317 390 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 158 IPR014001 -
Dere05g1317 390 PANTHER RNA HELICASE 11 315 - -
Dere05g1317 390 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 180 339 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1317 Dere-ChrDere05 21605036 21608989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1317 25 315 Eukaryotic Initiation Factors Gene Family AT3G19760 31.525 1.08e-33 127